Eukaryotic systematics: a user's guide for cell biologists and parasitologists

The Alveolate Perkinsus marinus: Biological Insights from EST Gene Discovery

(2010) Sandeep J Joseph et al.   BMC GENOMICS

The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility

(2010) Lillian K. Fritz-Laylin et al.   CELL

First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach

(2010) Cinzia Cantacessi et al.   INFECTION GENETICS AND EVOLUTION

Phylogenomic Evidence for Separate Acquisition of Plastids in Cryptophytes, Haptophytes, and Stramenopiles

(2010) D. Baurain et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Complete Plastid Genomes of the Two ‘Dinotoms’ Durinskia baltica and Kryptoperidinium foliaceum

(2010) Behzad Imanian et al.   PLoS One

Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life

(2010) Laura Wegener Parfrey et al.   SYSTEMATIC BIOLOGY

Massively Parallel Sequencing and Analysis of the Necator americanus Transcriptome

(2010) Cinzia Cantacessi et al.   PLoS Neglected Tropical Diseases

Streptophyte algae and the origin of embryophytes

(2009) Burkhard Becker et al.   ANNALS OF BOTANY

Trypanosoma bruceiATG8: Structural insights into autophagic-like mechanisms in protozoa

(2009) Rudolf Koopmann et al.   Autophagy

Early steps in plastid evolution: current ideas and controversies

(2009) Andrzej Bodył et al.   BIOESSAYS

Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree

(2009) T. Cavalier-Smith   Biology Letters

De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley

(2009) Burkhard Steuernagel et al.   BMC GENOMICS

Trypanosome Prereplication Machinery Contains a Single Functional Orc1/Cdc6 Protein, Which Is Typical ofArchaea

(2009) Patrícia Diogo de Melo Godoy et al.   EUKARYOTIC CELL

Characterization of the restriction enzyme-like endonuclease encoded by the Entamoeba histolytica non-long terminal repeat retrotransposon EhLINE1

(2009) Vijay Pal Yadav et al.   FEBS Journal

Analysis of Rare Genomic Changes Does Not Support the Unikont–Bikont Phylogeny and Suggests Cyanobacterial Symbiosis as the Point of Primary Radiation of Eukaryotes

(2009) Igor B. Rogozin et al.   Genome Biology and Evolution

Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates

(2009) Fabien Burki et al.   Genome Biology and Evolution

Hydrogenosomes and Mitosomes: Conservation and Evolution of Functions

(2009) MARK VAN DER GIEZEN   JOURNAL OF EUKARYOTIC MICROBIOLOGY

The RAB Family GTPase Rab1A fromPlasmodium falciparumDefines a Unique Paralog Shared by Chromalveolates and Rhizaria

(2009) MAREK ELIAS et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Phylogeny of the "Forgotten" Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta

(2009) M. W. Brown et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interrelationships of chromalveolates within a broadly sampled tree of photosynthetic protists

(2009) Valérie C. Reeb et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogenetic positions of Glaucophyta, green plants (Archaeplastida) and Haptophyta (Chromalveolata) as deduced from slowly evolving nuclear genes

(2009) Hisayoshi Nozaki et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Hypothesis for the Evolution of Nuclear-Encoded, Plastid-Targeted Glyceraldehyde-3-Phosphate Dehydrogenase Genes in “Chromalveolate” Members

(2009) Kiyotaka Takishita et al.   PLoS One

Eumycetozoa = Amoebozoa?: SSUrDNA Phylogeny of Protosteloid Slime Molds and Its Significance for the Amoebozoan Supergroup

(2009) Lora L. Shadwick et al.   PLoS One

Molecular Phylogeny and Description of the Novel Katablepharid Roombia truncata gen. et sp. nov., and Establishment of the Hacrobia Taxon nov

(2009) Noriko Okamoto et al.   PLoS One

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"

(2009) V. Hampl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

(2009) A. Z. Worden et al.   SCIENCE

Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms

(2009) A. Moustafa et al.   SCIENCE

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data

(2009) Scott DiGuistini et al.   GENOME BIOLOGY

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

(2008) F. Burki et al.   Biology Letters

Diversity and evolution of marine phytoplankton

(2008) Nathalie Simon et al.   COMPTES RENDUS BIOLOGIES

Multiple Genes of Apparent Algal Origin Suggest Ciliates May Once Have Been Photosynthetic

(2008) Adrian Reyes-Prieto et al.   CURRENT BIOLOGY

Ultrastructure and molecular phylogeny of Stephanopogon minuta: An enigmatic microeukaryote from marine interstitial environments

(2008) Naoji Yubuki et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

The mother of all parasites

(2008) Noriko Okamoto et al.   Future Microbiology

Evolution of the apicoplast and its hosts: From heterotrophy to autotrophy and back again

(2008) Miroslav Oborník et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

A HYPOTHESIS FOR PLASTID EVOLUTION IN CHROMALVEOLATES1

(2008) M. Virginia Sanchez-Puerta et al.   JOURNAL OF PHYCOLOGY

Plastid-Derived Genes in the Nonphotosynthetic Alveolate Oxyrrhis marina

(2008) C. H. Slamovits et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient Recruitment by Chromists of Green Algal Genes Encoding Enzymes for Carotenoid Biosynthesis

(2008) R. Frommolt et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Single Mitochondrial Porin of Trypanosoma brucei is the Main Metabolite Transporter in the Outer Mitochondrial Membrane

(2008) M. Pusnik et al.   MOLECULAR BIOLOGY AND EVOLUTION

A photosynthetic alveolate closely related to apicomplexan parasites

(2008) Robert B. Moore et al.   NATURE

Multigene Phylogeny of Choanozoa and the Origin of Animals

(2008) Kamran Shalchian-Tabrizi et al.   PLoS One

Evolutionary position of breviate amoebae and the primary eukaryote divergence

(2008) M. A. Minge et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogeny of Novel Naked Filose and Reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea Revised

(2008) David Bass et al.   PROTIST