Genome-wide expression profiling and phenotypic evaluation of European maize inbreds at seedling stage in response to heat stress

Transcriptome analysis of heat stress response in switchgrass (Panicum virgatum L.)

(2013) Yong-Fang Li et al.   BMC PLANT BIOLOGY

Ups and downs of a transcriptional landscape shape iron deficiency associated chlorosis of the maize inbreds B73 and Mo17

(2013) Claude Urbany et al.   BMC PLANT BIOLOGY

Physiological, Biochemical, and Molecular Mechanisms of Heat Stress Tolerance in Plants

(2013) Mirza Hasanuzzaman et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Application of MapMan and RiceNet drives systematic analyses of the early heat stress transcriptome in rice seedlings

(2013) Ki-Hong Jung et al.   JOURNAL OF PLANT BIOLOGY

Association mapping for chilling tolerance in elite flint and dent maize inbred lines evaluated in growth chamber and field experiments

(2013) ALEXANDER STRIGENS et al.   PLANT CELL AND ENVIRONMENT

A maize calcium-dependent protein kinase gene, ZmCPK4, positively regulated abscisic acid signaling and enhanced drought stress tolerance in transgenic Arabidopsis

(2013) Shanshan Jiang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

easyRNASeq: a bioconductor package for processing RNA-Seq data

(2012) N. Delhomme et al.   BIOINFORMATICS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Adaptation of US maize to temperature variations

(2012) Ethan E. Butler et al.   Nature Climate Change

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

(2011) R. Garg et al.   DNA RESEARCH

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Coping with Stresses: Roles of Calcium- and Calcium/Calmodulin-Regulated Gene Expression

(2011) Anireddy S.N. Reddy et al.   PLANT CELL

Stress responses to phenol in Arabidopsis and transcriptional changes revealed by microarray analysis

(2011) Jing Xu et al.   PLANTA

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Population structure and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markers

(2010) Delphine Van Inghelandt et al.   THEORETICAL AND APPLIED GENETICS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt

(2009) Steffen Durinck et al.   Nature Protocols

Genome-wide transcriptome analysis of two maize inbred lines under drought stress

(2009) Jun Zheng et al.   PLANT MOLECULAR BIOLOGY

Nonlinear temperature effects indicate severe damages to U.S. crop yields under climate change

(2009) W. Schlenker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global patterns of gene expression in rice cultivars undergoing a susceptible or resistant interaction with the parasitic plantStriga hermonthica

(2008) P. J. Swarbrick et al.   NEW PHYTOLOGIST

OXIDATIVE STRESS 3 is a chromatin-associated factor involved in tolerance to heavy metals and oxidative stress

(2008) Robert Blanvillain et al.   PLANT JOURNAL

Status and Prospects of Association Mapping in Plants

(2008) Chengsong Zhu et al.   Plant Genome

Glutaredoxins and thioredoxins in plants

(2007) Yves Meyer et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH