Insights into transcriptional changes that accompany organelle sequestration from the stolen nucleus of Mesodinium rubrum

Comparison of gene expression of Paramecium bursaria with and without Chlorella variabilis symbionts

(2014) Yuuki Kodama et al.   BMC GENOMICS

De Novo Transcriptomes of a Mixotrophic and a Heterotrophic Ciliate from Marine Plankton

(2014) Luciana F. Santoferrara et al.   PLoS One

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

Sequestered plastids in Mesodinium rubrum are functionally active up to 80 days of phototrophic growth without cryptomonad prey

(2013) Geumog Myung et al.   HARMFUL ALGAE

Plastid retention, use, and replacement in a kleptoplastidic ciliate

(2012) DM Schoener et al.   AQUATIC MICROBIAL ECOLOGY

Studies on the Genus Mesodinium II. Ultrastructural and Molecular Investigations of Five Marine Species Help Clarifying the Taxonomy

(2012) Lydia Garcia-Cuetos et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Trafficking of protein into the recently established photosynthetic organelles of Paulinella chromatophora

(2012) E. C. M. Nowack et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia

(2011) Christian Woehle et al.   Genome Biology and Evolution

Acquired Phototrophy in Ciliates: A Review of Cellular Interactions and Structural Adaptations1

(2011) MATTHEW D. JOHNSON   JOURNAL OF EUKARYOTIC MICROBIOLOGY

PHOTOACCLIMATION IN THE PHOTOTROPHIC MARINE CILIATE MESODINIUM RUBRUM (CILIOPHORA)1

(2011) Holly V. Moeller et al.   JOURNAL OF PHYCOLOGY

Protein Transport into Chloroplasts

(2010) Hsou-min Li et al.   Annual Review of Plant Biology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The endosymbiotic origin, diversification and fate of plastids

(2010) P. J. Keeling   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Acquired phototrophy in aquatic protists

(2009) DK Stoecker et al.   AQUATIC MICROBIAL ECOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Multiple Genes of Apparent Algal Origin Suggest Ciliates May Once Have Been Photosynthetic

(2008) Adrian Reyes-Prieto et al.   CURRENT BIOLOGY