Deep sequencing-based characterization of transcriptome of trifoliate orange (Poncirus trifoliata (L.) Raf.) in response to cold stress

Transcriptome profiling of the cold response and signaling pathways in Lilium lancifolium

(2014) Jingmao Wang et al.   BMC GENOMICS

Deep-sequencing transcriptome analysis of low temperature perception in a desert tree, Populus euphratica

(2014) Jinhuan Chen et al.   BMC GENOMICS

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

(2014) G Albert Wu et al.   NATURE BIOTECHNOLOGY

Characterization of a Wheat R2R3-MYB Transcription Factor Gene, TaMYB19, Involved in Enhanced Abiotic Stresses in Arabidopsis

(2014) Lichao Zhang et al.   PLANT AND CELL PHYSIOLOGY

The Arabidopsis 14-3-3 Protein RARE COLD INDUCIBLE 1A Links Low-Temperature Response and Ethylene Biosynthesis to Regulate Freezing Tolerance and Cold Acclimation

(2014) R. Catala et al.   PLANT CELL

Transcriptional regulation of 9-cis-epoxycarotenoid dioxygenase (NCED) gene by putrescine accumulation positively modulates ABA synthesis and drought tolerance in Lotus tenuis plants

(2014) Fabiana D. Espasandin et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

The roles of polyamines during the lifespan of plants: from development to stress

(2014) Antonio F. Tiburcio et al.   PLANTA

De novo characterization of the Anthurium transcriptome and analysis of its digital gene expression under cold stress

(2013) Dan-Qing Tian et al.   BMC GENOMICS

Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress

(2013) Yanjie Xu et al.   BMC GENOMICS

Global transcriptome profiles of Camellia sinensis during cold acclimation

(2013) Xin-Chao Wang et al.   BMC GENOMICS

The role of gibberellin signalling in plant responses to abiotic stress

(2013) E. H. Colebrook et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Calcium-Dependent Protein Kinases in Plants: Evolution, Expression and Function

(2013) Gardette R. Valmonte et al.   PLANT AND CELL PHYSIOLOGY

Critical cis-Acting Elements and Interacting Transcription Factors: Key Players Associated with Abiotic Stress Responses in Plants

(2013) Ji-Hong Liu et al.   PLANT MOLECULAR BIOLOGY REPORTER

A Basic Helix-Loop-Helix Transcription Factor, PtrbHLH, of Poncirus trifoliata Confers Cold Tolerance and Modulates Peroxidase-Mediated Scavenging of Hydrogen Peroxide

(2013) X.-S. Huang et al.   PLANT PHYSIOLOGY

Transcriptomic Analysis of a Tertiary Relict Plant, Extreme Xerophyte Reaumuria soongorica to Identify Genes Related to Drought Adaptation

(2013) Yong Shi et al.   PLoS One

Transcriptome Characterization and Sequencing-Based Identification of Salt-Responsive Genes in Millettia pinnata, a Semi-Mangrove Plant

(2012) J. Huang et al.   DNA RESEARCH

Ethylene Signaling Negatively Regulates Freezing Tolerance by Repressing Expression ofCBFand Type-AARRGenes inArabidopsis

(2012) Yiting Shi et al.   PLANT CELL

Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissue Revealed by RNA-Seq

(2012) A. Kakumanu et al.   PLANT PHYSIOLOGY

Ectopic expression of MdSPDS1 in sweet orange (Citrus sinensis Osbeck) reduces canker susceptibility: involvement of H2O2 production and transcriptional alteration

(2011) Xing-Zheng Fu et al.   BMC PLANT BIOLOGY

Hormone balance and abiotic stress tolerance in crop plants

(2011) Zvi Peleg et al.   CURRENT OPINION IN PLANT BIOLOGY

Identification and characterization of low temperature stress responsive genes in Poncirus trifoliata by suppression subtractive hybridization

(2011) T. Peng et al.   GENE

An arginine decarboxylase gene PtADC from Poncirus trifoliata confers abiotic stress tolerance and promotes primary root growth in Arabidopsis

(2011) Jing Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Next-generation transcriptome assembly

(2011) Jeffrey A. Martin et al.   NATURE REVIEWS GENETICS

Transcription factors in plants and ABA dependent and independent abiotic stress signalling

(2010) P. K. Agarwal et al.   BIOLOGIA PLANTARUM

Calcium-Dependent Protein Kinase CPK21 Functions in Abiotic Stress Response in Arabidopsis thaliana

(2010) Sandra Franz et al.   Molecular Plant

Plant responses to cold: transcriptome analysis of wheat

(2010) Mark O. Winfield et al.   PLANT BIOTECHNOLOGY JOURNAL

Enhanced tolerance to freezing in tobacco and tomato overexpressing transcription factor TERF2/LeERF2 is modulated by ethylene biosynthesis

(2010) Zhijin Zhang et al.   PLANT MOLECULAR BIOLOGY

The CBFs: Three arabidopsis transcription factors to cold acclimate

(2010) Joaquín Medina et al.   PLANT SCIENCE

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Reactive oxygen species in abiotic stress signaling

(2009) Pinja Jaspers et al.   PHYSIOLOGIA PLANTARUM

Cold stress and acclimation - what is important for metabolic adjustment?

(2009) A. Janská et al.   PLANT BIOLOGY

Ethylene Mediates Response and Tolerance to Potassium Deprivation in Arabidopsis

(2009) J.-Y. Jung et al.   PLANT CELL

Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses

(2009) K. Nakashima et al.   PLANT PHYSIOLOGY

Ethylene signaling: new levels of complexity and regulation

(2008) Mandy D Kendrick et al.   CURRENT OPINION IN PLANT BIOLOGY

The Transcriptional Co-activator MBF1c Is a Key Regulator of Thermotolerance inArabidopsis thaliana

(2008) Nobuhiro Suzuki et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY

The Cold-Inducible CBF1 Factor-Dependent Signaling Pathway Modulates the Accumulation of the Growth-Repressing DELLA Proteins via Its Effect on Gibberellin Metabolism

(2008) P. Achard et al.   PLANT CELL