High correlation between genotypes and phenotypes of environmental bacteria Comamonas testosteroni strains

Comparative Genomic and Transcriptomic Analyses Reveal Habitat Differentiation and Different Transcriptional Responses during Pectin Metabolism in Alishewanella Species

(2013) Jaejoon Jung et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genome characterization of Achromobacter members reveals potential genetic determinants facilitating the adaptation to a pathogenic lifestyle

(2013) Xiangyang Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Correlation Models between Environmental Factors and Bacterial Resistance to Antimony and Copper

(2013) Zunji Shi et al.   PLoS One

Permanent draft genome sequence of Comamonas testosteroni KF-1

(2013) Michael Weiss et al.   Standards in Genomic Sciences

Assimilation of aromatic compounds by Comamonas testosteroni: characterization and spreadability of protocatechuate 4,5-cleavage pathway in bacteria

(2012) Bin Ni et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens

(2012) Jihye Park et al.   BMC GENOMICS

Purifying Selection and Molecular Adaptation in the Genome of Verminephrobacter, the Heritable Symbiotic Bacteria of Earthworms

(2012) Kasper U. Kjeldsen et al.   Genome Biology and Evolution

Phylogenetic and genome analyses of antimony-oxidizing bacteria isolated from antimony mined soil

(2012) Jie Li et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Genome Sequence of Comamonas testosteroni ATCC 11996, a Representative Strain Involved in Steroid Degradation

(2012) W. Gong et al.   JOURNAL OF BACTERIOLOGY

Testing the Infinitely Many Genes Model for the Evolution of the Bacterial Core Genome and Pangenome

(2012) R. Eric Collins et al.   MOLECULAR BIOLOGY AND EVOLUTION

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Structural diversity of bacterial flagellar motors

(2011) Songye Chen et al.   EMBO JOURNAL

Catheter-related bacteremia caused by Comamonas testosteroni in a hemodialysis patient

(2011) William NSEIR et al.   Hemodialysis International

Genome Sequence of the Rice-Pathogenic Bacterium Acidovorax avenae subsp. avenae RS-1

(2011) G.-L. Xie et al.   JOURNAL OF BACTERIOLOGY

Genome Sequences of Alicycliphilus denitrificans Strains BC and K601T

(2011) M. J. Oosterkamp et al.   JOURNAL OF BACTERIOLOGY

Comamonas testosteroni infection in Taiwan: Reported two cases and literature review

(2011) Tung-Lin Tsui et al.   JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors

(2011) L. Chen et al.   NUCLEIC ACIDS RESEARCH

The Cyst-Dividing Bacterium Ramlibacter tataouinensis TTB310 Genome Reveals a Well-Stocked Toolbox for Adaptation to a Desert Environment

(2011) Gilles De Luca et al.   PLoS One

Genome analysis and characterization of zinc efflux systems of a highly zinc-resistant bacterium, Comamonas testosteroni S44

(2011) Jinbo Xiong et al.   RESEARCH IN MICROBIOLOGY

Characterization of the Protocatechuate 4,5-Cleavage Pathway Operon in Comamonas sp. Strain E6 and Discovery of a Novel Pathway Gene

(2010) N. Kamimura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Steroid degradation genes in Comamonas testosteroni TA441: Isolation of genes encoding a Δ4(5)-isomerase and 3α- and 3β-dehydrogenases and evidence for a 100kb steroid degradation gene hot spot

(2010) Masae Horinouchi et al.   JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY

Steroid degradation in Comamonas testosteroni

(2010) Masae Horinouchi et al.   JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

The Complete Genome of Comamonas testosteroni Reveals Its Genetic Adaptations to Changing Environments

(2009) Y.-F. Ma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Genes involved in arsenic transformation and resistance associated with different levels of arsenic-contaminated soils

(2009) Lin Cai et al.   BMC MICROBIOLOGY

The genome ofPolaromonas naphthalenivoransstrain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer

(2009) Jane M. Yagi et al.   ENVIRONMENTAL MICROBIOLOGY

Post-operative endophthalmitis due to an unusual pathogen, Comamonas testosteroni

(2009) A. K. Reddy et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Comparative genomics: the bacterial pan-genome

(2008) Hervé Tettelin et al.   CURRENT OPINION IN MICROBIOLOGY