Parasitic ‘ Candidatus Aquarickettsia rohweri’ is a marker of disease susceptibility in Acropora cervicornis but is lost during thermal stress

Understanding the role of the shrimp gut microbiome in health and disease

(2020) Corey C. Holt et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Survivorship and growth in staghorn coral (Acropora cervicornis) outplanting projects in the Florida Keys National Marine Sanctuary

(2020) Matthew Ware et al.   PLoS One

Disentangling the effect of host-genotype and environment on the microbiome of the coral Acropora tenuis

(2019) Bettina Glasl et al.   PeerJ

Coral bacterial community structure responds to environmental change in a host-specific manner

(2019) Maren Ziegler et al.   Nature Communications

Multiple stressors interact primarily through antagonism to drive changes in the coral microbiome

(2019) Rebecca L. Maher et al.   Scientific Reports

Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov

(2019) J. Grace Klinges et al.   ISME Journal

Heat‐induced shift in coral microbiome reveals several members of the Rhodobacteraceae family as indicator species for thermal stress in Porites lutea

(2019) Wirulda Pootakham et al.   MicrobiologyOpen

Ecology, histopathology, and microbial ecology of a white-band disease outbreak in the threatened staghorn coral Acropora cervicornis

(2019) SA Gignoux-Wolfsohn et al.   DISEASES OF AQUATIC ORGANISMS

Microbiome differences in disease-resistant vs. susceptible Acropora corals subjected to disease challenge assays

(2019) Stephanie M. Rosales et al.   Scientific Reports

Low diversity gut microbiota dysbiosis: drivers, functional implications and recovery

(2018) Michael Kriss et al.   CURRENT OPINION IN MICROBIOLOGY

Dominance of Endozoicomonas bacteria throughout coral bleaching and mortality suggests structural inflexibility of the Pocillopora verrucosa microbiome

(2018) Claudia Pogoreutz et al.   Ecology and Evolution

Bleaching causes loss of disease resistance within the threatened coral species Acropora cervicornis

(2018) Erinn M Muller et al.   eLife

The microbiome in threatened species conservation

(2018) Annie G. West et al.   BIOLOGICAL CONSERVATION

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Genotype and local environment dynamically influence growth, disturbance response and survivorship in the threatened coral, Acropora cervicornis

(2017) Crawford Drury et al.   PLoS One

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas

(2016) Matthew J. Neave et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbiome-wide association studies link dynamic microbial consortia to disease

(2016) Jack A. Gilbert et al.   NATURE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Caribbean corals house shared and host-specific microbial symbionts over time and space

(2016) Nathaniel D. Chu et al.   Environmental Microbiology Reports

Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales

(2016) Jesse R. Zaneveld et al.   Nature Communications

IsAcropora palmatarecovering? a case study in Los Roques National Park, Venezuela

(2016) Aldo Croquer et al.   PeerJ

Genetic Signature of Resistance to White Band Disease in the Caribbean Staghorn Coral Acropora cervicornis

(2016) Silvia Libro et al.   PLoS One

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease

(2015) James D. Lewis et al.   Cell Host & Microbe

The coral disease triangle

(2015) John F. Bruno   Nature Climate Change

Identification of Candidate Coral Pathogens on White Band Disease-Infected Staghorn Coral

(2015) Sarah A. Gignoux-Wolfsohn et al.   PLoS One

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Large numbers of Acropora palmata grow in shallow water in St. John, US Virgin Islands

(2014) Peter J Edmunds   BULLETIN OF MARINE SCIENCE

Experimental antibiotic treatment identifies potential pathogens of white band disease in the endangered Caribbean coral Acropora cervicornis

(2014) M. J. Sweet et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Disease dynamics and potential mitigation among restored and wild staghorn coral,Acropora cervicornis

(2014) Margaret W. Miller et al.   PeerJ

“Candidatus Midichloriaceae” fam. nov. (Rickettsiales), an Ecologically Widespread Clade of Intracellular Alphaproteobacteria

(2013) Matteo Montagna et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Microbiome of the Red Sea Coral Stylophora pistillata Is Dominated by Tissue-Associated Endozoicomonas Bacteria

(2013) Till Bayer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?

(2013) Marti J. Anderson et al.   ECOLOGICAL MONOGRAPHS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The Microbiome in Infectious Disease and Inflammation

(2012) Kenya Honda et al.   Annual Review of Immunology

Bleaching, disease and recovery in the threatened scleractinian coral Acropora palmata in St. John, US Virgin Islands: 2003–2010

(2012) C. S. Rogers et al.   CORAL REEFS

Caribbean coral diseases: primary transmission or secondary infection?

(2012) Erinn M. Muller et al.   GLOBAL CHANGE BIOLOGY

Members of native coral microbiota inhibit glycosidases and thwart colonization of coral mucus by an opportunistic pathogen

(2012) Cory J Krediet et al.   ISME Journal

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Mycosporine-Like Amino Acids from Coral Dinoflagellates

(2011) Nedeljka N. Rosic et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Rickettsia Genome Overrun by Mobile Genetic Elements Provides Insight into the Acquisition of Genes Characteristic of an Obligate Intracellular Lifestyle

(2011) J. J. Gillespie et al.   JOURNAL OF BACTERIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

How Microbial Community Composition Regulates Coral Disease Development

(2010) Justin Mao-Jones et al.   PLOS BIOLOGY

Disease incidence is related to bleaching extent in reef-building corals

(2009) Marilyn E. Brandt et al.   ECOLOGY

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

(2009) Shinichi Sunagawa et al.   ISME Journal

Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis

(2008) V. M. Weis   JOURNAL OF EXPERIMENTAL BIOLOGY

Metabolic interactions between algal symbionts and invertebrate hosts

(2008) DAVID YELLOWLEES et al.   PLANT CELL AND ENVIRONMENT

Natural Disease Resistance in Threatened Staghorn Corals

(2008) Steven V. Vollmer et al.   PLoS One