Transcriptome characterization of three wild Chinese Vitis uncovers a large number of distinct disease related genes
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Transcriptome characterization of three wild Chinese Vitis uncovers a large number of distinct disease related genes
Authors
Keywords
Grape, Chinese wild <em class=EmphasisTypeItalic >Vitis</em>, <em class=EmphasisTypeItalic >De novo</em> transcriptome, Disease related genes, <em class=EmphasisTypeItalic >Cis</em>-NATs
Journal
BMC GENOMICS
Volume 16, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-03-20
DOI
10.1186/s12864-015-1442-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Comparative transcriptome analysis of eggplant (Solanum melongena L.) and turkey berry (Solanum torvum Sw.): phylogenomics and disease resistance analysis
- (2014) Xu Yang et al. BMC GENOMICS
- Functions of EDS1-like and PAD4 genes in grapevine defenses against powdery mildew
- (2014) Fei Gao et al. PLANT MOLECULAR BIOLOGY
- Chitin-induced activation of immune signaling by the rice receptor CEBiP relies on a unique sandwich-type dimerization
- (2014) M. Hayafune et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Plant pattern-recognition receptors
- (2014) Cyril Zipfel TRENDS IN IMMUNOLOGY
- Transcriptome of Erysiphe necator-infected Vitis pseudoreticulata leaves provides insight into grapevine resistance to powdery mildew
- (2014) Kai Weng et al. Horticulture Research
- De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity
- (2013) Luca Venturini et al. BMC GENOMICS
- Genome-wide identification, evolutionary and expression analysis of the aspartic protease gene superfamily in grape
- (2013) Rongrong Guo et al. BMC GENOMICS
- Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro
- (2013) Nicolas C Nalpas et al. BMC GENOMICS
- New genes as drivers of phenotypic evolution
- (2013) Sidi Chen et al. NATURE REVIEWS GENETICS
- APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs
- (2013) Francesco Licausi et al. NEW PHYTOLOGIST
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- The High Polyphenol Content of Grapevine Cultivar Tannat Berries Is Conferred Primarily by Genes That Are Not Shared with the Reference Genome
- (2013) C. Da Silva et al. PLANT CELL
- Genome-wide characterization and expression analysis of genetic variants in sweet orange
- (2013) Wen-Biao Jiao et al. PLANT JOURNAL
- The comparative analysis of the potential relationship between resveratrol and stilbene synthase gene family in the development stages of grapes (Vitis quinquangularis and Vitis vinifera)
- (2013) Jiangli Shi et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Plant Defense Against Herbivores: Chemical Aspects
- (2012) Axel Mithöfer et al. Annual Review of Plant Biology
- The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions
- (2012) Shaogui Guo et al. NATURE GENETICS
- GenBank
- (2012) Dennis A. Benson et al. NUCLEIC ACIDS RESEARCH
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Ectopic expression of VpALDH2B4, a novel aldehyde dehydrogenase gene from Chinese wild grapevine (Vitis pseudoreticulata), enhances resistance to mildew pathogens and salt stress in Arabidopsis
- (2012) Yingqiang Wen et al. PLANTA
- Hormonal Modulation of Plant Immunity
- (2011) Corné M.J. Pieterse et al. Annual Review of Cell and Developmental Biology
- iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences
- (2011) Yi Zheng et al. BMC BIOINFORMATICS
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Genetic structure and domestication history of the grape
- (2011) Sean Myles et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistance
- (2011) Gabriele Di Gaspero et al. THEORETICAL AND APPLIED GENETICS
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Breakdown of resistance to grapevine downy mildew upon limited deployment of a resistant variety
- (2010) Elisa Peressotti et al. BMC PLANT BIOLOGY
- Genome-wide patterns of genetic variation among elite maize inbred lines
- (2010) Jinsheng Lai et al. NATURE GENETICS
- Ongoing and future developments at the Universal Protein Resource
- (2010) NUCLEIC ACIDS RESEARCH
- PEPR2 Is a Second Receptor for the Pep1 and Pep2 Peptides and Contributes to Defense Responses in Arabidopsis
- (2010) Y. Yamaguchi et al. PLANT CELL
- Expression and functional analysis of two genes encoding transcription factors, VpWRKY1 and VpWRKY2, isolated from Chinese wild Vitis pseudoreticulata
- (2010) Huie Li et al. PLANTA
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- The multifunctional leucine-rich repeat receptor kinase BAK1 is implicated in Arabidopsis development and immunity
- (2009) Sandra Postel et al. EUROPEAN JOURNAL OF CELL BIOLOGY
- Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
- (2009) Szymon Swiezewski et al. NATURE
- Plant hormones are versatile chemical regulators of plant growth
- (2009) Aaron Santner et al. Nature Chemical Biology
- Up-regulated transcripts in a compatible powdery mildew–grapevine interaction
- (2009) Csaba Fekete et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- The GOA database in 2009--an integrated Gene Ontology Annotation resource
- (2008) D. Barrell et al. NUCLEIC ACIDS RESEARCH
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started