Transcriptome analysis of thermophilic methylotrophic Bacillus methanolicus MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape

ReadXplorer—visualization and analysis of mapped sequences

(2014) Rolf Hilker et al.   BIOINFORMATICS

Characterization of two transketolases encoded on the chromosome and the plasmid pBM19 of the facultative ribulose monophosphate cycle methylotroph Bacillus methanolicus

(2014) Benno Markert et al.   BMC MICROBIOLOGY

Differential RNA-seq: the approach behind and the biological insight gained

(2014) Cynthia M Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

In vitroactivation of NAD-dependent alcohol dehydrogenases by Nudix hydrolases is more widespread than assumed

(2014) Andrea M. Ochsner et al.   FEBS LETTERS

Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5′-ends of primary transcripts

(2014) Patrick Schwientek et al.   JOURNAL OF BIOTECHNOLOGY

Proteomic analysis of the thermophilic methylotrophBacillus methanolicusMGA3

(2014) Jonas E. N. Müller et al.   PROTEOMICS

RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation

(2013) Sandra Wiegand et al.   BMC GENOMICS

Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique

(2013) Katharina Pfeifer-Sancar et al.   BMC GENOMICS

Characterization of Fructose 1,6-Bisphosphatase and Sedoheptulose 1,7-Bisphosphatase from the Facultative Ribulose Monophosphate Cycle Methylotroph Bacillus methanolicus

(2013) J. Stolzenberger et al.   JOURNAL OF BACTERIOLOGY

The methylotrophic Bacillus methanolicus MGA3 possesses two distinct fructose 1,6-bisphosphate aldolases

(2013) J. Stolzenberger et al.   MICROBIOLOGY-SGM

Riboswitches in eubacteria sense the second messenger c-di-AMP

(2013) James W Nelson et al.   Nature Chemical Biology

Gene regulation by antisense transcription

(2013) Vicent Pelechano et al.   NATURE REVIEWS GENETICS

Methylotrophic Bacillus methanolicus Encodes Two Chromosomal and One Plasmid Born NAD+ Dependent Methanol Dehydrogenase Paralogs with Different Catalytic and Biochemical Properties

(2013) Anne Krog et al.   PLoS One

Genome Sequence of Thermotolerant Bacillus methanolicus: Features and Regulation Related to Methylotrophy and Production of l-Lysine and l-Glutamate from Methanol

(2012) Tonje M. B. Heggeset et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BsrG/SR4 from Bacillus subtilis- the first temperature-dependent type I toxin-antitoxin system

(2012) Natalie Jahn et al.   MOLECULAR MICROBIOLOGY

The anti-Shine–Dalgarno sequence drives translational pausing and codon choice in bacteria

(2012) Gene-Wei Li et al.   NATURE

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

(2011) Jochen Blom et al.   BIOINFORMATICS

Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes

(2011) Xiaobin Zheng et al.   BMC GENOMICS

Expression of tmRNA in mycobacteria is increased by antimicrobial agents that target the ribosome

(2011) Nadya Andini et al.   FEMS MICROBIOLOGY LETTERS

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

New insights into riboswitch regulation mechanisms

(2011) Laurène Bastet et al.   MOLECULAR MICROBIOLOGY

Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions

(2011) Cornelius Schmidtke et al.   NUCLEIC ACIDS RESEARCH

ARNold: A web tool for the prediction of Rho-independent transcription terminators

(2011) Magali Naville et al.   RNA Biology

Bacterial Antisense RNAs: How Many Are There, and What Are They Doing?

(2010) Maureen Kiley Thomason et al.   Annual Review of Genetics

Proximity of the Start Codon to a Leaderless mRNA's 5' Terminus Is a Strong Positive Determinant of Ribosome Binding and Expression in Escherichia coli

(2010) K. M. Krishnan et al.   JOURNAL OF BACTERIOLOGY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Biochemical Features and Functional Implications of the RNA-Based T-Box Regulatory Mechanism

(2009) A. Gutierrez-Preciado et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Principles of c-di-GMP signalling in bacteria

(2009) Regine Hengge   NATURE REVIEWS MICROBIOLOGY

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

(2009) Martin Kircher et al.   GENOME BIOLOGY

Overexpression of Wild-Type Aspartokinase Increases L-Lysine Production in the Thermotolerant Methylotrophic Bacterium Bacillus methanolicus

(2008) O. M. Jakobsen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An analysis of initiation codon utilization in the Domain Bacteria - concerns about the quality of bacterial genome annotation

(2008) A. Villegas et al.   MICROBIOLOGY-SGM

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Comparative genomic analysis of T-box regulatory systems in bacteria

(2008) A. G. Vitreschak et al.   RNA

Riboswitches in Eubacteria Sense the Second Messenger Cyclic Di-GMP

(2008) N. Sudarsan et al.   SCIENCE

Methanol-based industrial biotechnology: current status and future perspectives of methylotrophic bacteria

(2008) Jens Schrader et al.   TRENDS IN BIOTECHNOLOGY