Dormant non-culturable Mycobacterium tuberculosis retains stable low-abundant mRNA

Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels

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Potassium availability triggers Mycobacterium tuberculosis transition to, and resuscitation from, non-culturable (dormant) states

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The PhoP-Dependent ncRNA Mcr7 Modulates the TAT Secretion System in Mycobacterium tuberculosis

(2014) Luis Solans et al.   PLoS Pathogens

Small RNAs in mycobacteria: an unfolding story

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New 2-Thiopyridines as Potential Candidates for Killing both Actively Growing and Dormant Mycobacterium tuberculosis Cells

(2013) Elena Salina et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

PATRIC, the bacterial bioinformatics database and analysis resource

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Regulation of toxin–antitoxin systems by proteolysis

(2013) Iwona Brzozowska et al.   PLASMID

A Small RNA Encoded in the Rv2660c Locus of Mycobacterium tuberculosis Is Induced during Starvation and Infection

(2013) Joanna Houghton et al.   PLoS One

Cyclic Amp-Dependent Resuscitation of Dormant Mycobacteria by Exogenous Free Fatty Acids

(2013) Margarita Shleeva et al.   PLoS One

Mycobacterial toxin MazF-mt6 inhibits translation through cleavage of 23S rRNA at the ribosomal A site

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Definition and annotation of (myco)bacterial non-coding RNA

(2013) Gyanu Lamichhane et al.   TUBERCULOSIS

VapC20 of Mycobacterium tuberculosis cleaves the Sarcin–Ricin loop of 23S rRNA

(2013) Kristoffer S. Winther et al.   Nature Communications

Revisiting Global Gene Expression Analysis

(2012) Jakob Lovén et al.   CELL

A screen for non-coding RNA in Mycobacterium tuberculosis reveals a cAMP-responsive RNA that is expressed during infection

(2012) Shaaretha Pelly et al.   GENE

The Dormancy Regulator DosR Controls Ribosome Stability in Hypoxic Mycobacteria

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Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Global analysis of mRNA stability in Mycobacterium tuberculosis

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A Genome-Wide Identification Analysis of Small Regulatory RNAs in Mycobacterium tuberculosis by RNA-Seq and Conservation Analysis

(2012) Danilo Pellin et al.   PLoS One

Genome-Wide Discovery of Small RNAs in Mycobacterium tuberculosis

(2012) Paolo Miotto et al.   PLoS One

Non-coding RNA and its potential role in Mycobacterium tuberculosis pathogenesis

(2012) Kristine Arnvig et al.   RNA Biology

Identification of small RNAs in Mycobacterium smegmatis using heterologous Hfq

(2012) S.-K. Li et al.   RNA

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

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RNA Dynamics in Aging Bacterial Spores

(2011) Einat Segev et al.   CELL

The K+ uptake regulator TrkA controls membrane potential, pH homeostasis and multidrug susceptibility in Mycobacterium smegmatis

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Dormant ovoid cells of Mycobacterium tuberculosis are formed in response to gradual external acidification

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Characterization and Transcriptome Analysis of Mycobacterium tuberculosis Persisters

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Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis

(2011) Kristine B. Arnvig et al.   PLoS Pathogens

Letting Sleeping dos Lie: Does Dormancy Play a Role in Tuberculosis?

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Simple Model for Testing Drugs against Nonreplicating Mycobacterium tuberculosis

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Comprehensive comparative analysis of strand-specific RNA sequencing methods

(2010) Joshua Z Levin et al.   NATURE METHODS

Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis

(2010) J. M. DiChiara et al.   NUCLEIC ACIDS RESEARCH

TubercuList – 10 years after

(2010) Jocelyne M. Lew et al.   TUBERCULOSIS

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Identification of small RNAs inMycobacterium tuberculosis

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Initiation of ribosome degradation during starvation in Escherichia coli

(2009) M. A. Zundel et al.   RNA

Comprehensive Functional Analysis of Mycobacterium tuberculosis Toxin-Antitoxin Systems: Implications for Pathogenesis, Stress Responses, and Evolution

(2009) Holly R. Ramage et al.   PLoS Genetics

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS