A Genome-Wide Identification Analysis of Small Regulatory RNAs in Mycobacterium tuberculosis by RNA-Seq and Conservation Analysis

High-throughput DNA sequencing - concepts and limitations

(2010) Martin Kircher et al.   BIOESSAYS

RNAs: regulators of bacterial virulence

(2010) Jonas Gripenland et al.   NATURE REVIEWS MICROBIOLOGY

Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis

(2010) J. M. DiChiara et al.   NUCLEIC ACIDS RESEARCH

sRNAscanner: A Computational Tool for Intergenic Small RNA Detection in Bacterial Genomes

(2010) Jayavel Sridhar et al.   PLoS One

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The Centrality of RNA

(2009) Phillip A. Sharp   CELL

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

Experimental approaches for the discovery and characterization of regulatory small RNA

(2009) Cynthia Mira Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

A broadening world of bacterial small RNAs

(2009) Jane M Liu et al.   CURRENT OPINION IN MICROBIOLOGY

Whole-Genome Tiling Array Analysis of Mycobacterium leprae RNA Reveals High Expression of Pseudogenes and Noncoding Regions

(2009) T. Akama et al.   JOURNAL OF BACTERIOLOGY

Identification of small RNAs inMycobacterium tuberculosis

(2009) Kristine B. Arnvig et al.   MOLECULAR MICROBIOLOGY

A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi

(2009) Timothy T. Perkins et al.   PLoS Genetics

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

(2008) Anke Busch et al.   BIOINFORMATICS

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Small RNAs establish gene expression thresholds

(2008) Erel Levine et al.   CURRENT OPINION IN MICROBIOLOGY

A rough guide to the non-coding RNA world ofSalmonella

(2008) Jörg Vogel   MOLECULAR MICROBIOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

TargetRNA: a tool for predicting targets of small RNA action in bacteria

(2008) B. Tjaden   NUCLEIC ACIDS RESEARCH

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs

(2008) Jonathan Livny et al.   PLoS One