Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars

The Phenylpropanoid Pathway Is Controlled at Different Branches by a Set of R2R3-MYB C2 Repressors in Grapevine

(2015) Erika Cavallini et al.   PLANT PHYSIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Transcriptomic analysis of the late stages of grapevine (Vitis vinifera cv. Cabernet Sauvignon) berry ripening reveals significant induction of ethylene signaling and flavor pathways in the skin

(2014) Grant R Cramer et al.   BMC PLANT BIOLOGY

Metabolite and transcript profiling of berry skin during fruit development elucidates differential regulation between Cabernet Sauvignon and Shiraz cultivars at branching points in the polyphenol pathway

(2014) Asfaw Degu et al.   BMC PLANT BIOLOGY

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype

(2014) Nicola Vitulo et al.   BMC PLANT BIOLOGY

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

(2014) Juan A Vizcaíno et al.   NATURE BIOTECHNOLOGY

Transcriptomes and Proteomes Define Gene Expression Progression in Pre-meiotic Maize Anthers

(2014) Han Zhang et al.   G3-Genes Genomes Genetics

Regional Differentiation of New Zealand Pinot noir Wine by Wine Professionals Using Canonical Variate Analysis

(2013) Elizabeth Tomasino et al.   AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE

De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity

(2013) Luca Venturini et al.   BMC GENOMICS

Proteomic analysis indicates massive changes in metabolism prior to the inhibition of growth and photosynthesis of grapevine (Vitis vinifera L.) in response to water deficit

(2013) Grant R Cramer et al.   BMC PLANT BIOLOGY

Metabolite profiling and network analysis reveal coordinated changes in grapevine water stress response

(2013) Uri Hochberg et al.   BMC PLANT BIOLOGY

Integrated Analysis of Transcriptomic and Proteomic Data

(2013) Saad Haider et al.   CURRENT GENOMICS

Comparative Analyses of Stilbenoids in Canes of Major Vitis vinifera L. Cultivars

(2013) Carole Lambert et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Metabolic profiling reveals coordinated switches in primary carbohydrate metabolism in grape berry (Vitis vinifera L.), a non-climacteric fleshy fruit

(2013) Zhan Wu Dai et al.   JOURNAL OF EXPERIMENTAL BOTANY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

(2012) Marcus Bantscheff et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

The Shikimate Pathway and Aromatic Amino Acid Biosynthesis in Plants

(2012) Hiroshi Maeda et al.   Annual Review of Plant Biology

Normalization and missing value imputation for label-free LC-MS analysis

(2012) Yuliya V Karpievitch et al.   BMC BIOINFORMATICS

The genes and enzymes of the carotenoid metabolic pathway in Vitis vinifera L.

(2012) Philip R Young et al.   BMC GENOMICS

Transcriptome analysis at four developmental stages of grape berry (Vitis vinifera cv. Shiraz) provides insights into regulated and coordinated gene expression

(2012) Crystal Sweetman et al.   BMC GENOMICS

Genome-wide analysis of the grapevine stilbene synthase multigenic family: genomic organization and expression profiles upon biotic and abiotic stresses

(2012) Alessandro Vannozzi et al.   BMC PLANT BIOLOGY

Post-translational regulation of WRKY transcription factors in plant immunity

(2012) Nobuaki Ishihama et al.   CURRENT OPINION IN PLANT BIOLOGY

The Grapevine Expression Atlas Reveals a Deep Transcriptome Shift Driving the Entire Plant into a Maturation Program

(2012) M. Fasoli et al.   PLANT CELL

Structural, Functional, and Evolutionary Analysis of the Unusually Large Stilbene Synthase Gene Family in Grapevine

(2012) C. Parage et al.   PLANT PHYSIOLOGY

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Peroxiredoxins in Plants and Cyanobacteria

(2011) Karl-Josef Dietz   ANTIOXIDANTS & REDOX SIGNALING

Polyphenolic profiles detected in the ripe berries of Vitis vinifera germplasm

(2011) Zhenchang Liang et al.   FOOD CHEMISTRY

Systematic Comparison of Label-Free, Metabolic Labeling, and Isobaric Chemical Labeling for Quantitative Proteomics on LTQ Orbitrap Velos

(2011) Zhou Li et al.   JOURNAL OF PROTEOME RESEARCH

Ecotypic Variability in the Metabolic Response of Seeds to Diurnal Hydration–Dehydration Cycles and its Relationship to Seed Vigor

(2011) Bing Bai et al.   PLANT AND CELL PHYSIOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Genetic structure and domestication history of the grape

(2011) Sean Myles et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Grapevine under deficit irrigation: hints from physiological and molecular data

(2010) M. M. Chaves et al.   ANNALS OF BOTANY

Phenolic Characterization of Malbec Wines from Mendoza Province (Argentina)

(2010) Martín Fanzone et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Relationship between Red Wine Grades and Phenolics. 1. Tannin and Total Phenolics Concentrations

(2010) Meagan D. Mercurio et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Water Deficit Increases Stilbene Metabolism in Cabernet Sauvignon Berries

(2010) Laurent G. Deluc et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Synthesis of Procyanidin B3 and Its Anti-inflammatory Activity. The Effect of 4-Alkoxy Group of Catechin Electrophile in the Yb(OTf)3-Catalyzed Condensation with Catechin Nucleophile

(2010) Yukiko Oizumi et al.   JOURNAL OF ORGANIC CHEMISTRY

Different Anthocyanin Profiles of the Skin and the Pulp of Yan73 (Muscat Hamburg × Alicante Bouschet) Grape Berries

(2010) Jian-Jun He et al.   MOLECULES

Biosynthesis of Anthocyanins and Their Regulation in Colored Grapes

(2010) Fei He et al.   MOLECULES

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq

(2010) S. Zenoni et al.   PLANT PHYSIOLOGY

Proteomic analysis of β-1,3-glucanase in grape berry tissues

(2009) Wei Wang et al.   ACTA PHYSIOLOGIAE PLANTARUM

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay

(2009) Laurent G Deluc et al.   BMC GENOMICS

Estimating accuracy of RNA-Seq and microarrays with proteomics

(2009) Xing Fu et al.   BMC GENOMICS

Function of antioxidant enzymes and metabolites during maturation of pea fruits

(2009) M. A. Matamoros et al.   JOURNAL OF EXPERIMENTAL BOTANY

A gate–latch–lock mechanism for hormone signalling by abscisic acid receptors

(2009) Karsten Melcher et al.   NATURE

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Proteomic and selected metabolite analysis of grape berry tissues under well-watered and water-deficit stress conditions

(2009) Jérôme Grimplet et al.   PROTEOMICS

Proteome changes in the skin of the grape cultivar Barbera among different stages of ripening

(2008) Alfredo S Negri et al.   BMC GENOMICS

Ripening and Genotype Control Stilbene Accumulation in Healthy Grapes

(2008) Pamela Gatto et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A Rapid and effective method for RNA extraction from different tissues of grapevine and other woody plants

(2008) Giorgio Gambino et al.   PHYTOCHEMICAL ANALYSIS

Abiotic stress response in plants: When post-transcriptional and post-translational regulations control transcription

(2008) Elisabetta Mazzucotelli et al.   PLANT SCIENCE