σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough

GlnR Negatively Regulates the Transcription of the Alanine Dehydrogenase Encoding Gene ald in Amycolatopsis mediterranei U32 under Nitrogen Limited Conditions via Specific Binding to Its Major Transcription Initiation Site

(2014) Ying Wang et al.   PLoS One

RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

(2013) Pavel S Novichkov et al.   BMC GENOMICS

Regulation of the ald Gene Encoding Alanine Dehydrogenase by AldR in Mycobacterium smegmatis

(2013) J.-A. Jeong et al.   JOURNAL OF BACTERIOLOGY

Cyclic di-GMP inhibitsVibrio choleraemotility by repressing induction of transcription and inducing extracellular polysaccharide production

(2013) Disha Srivastava et al.   MOLECULAR MICROBIOLOGY

GenBank

(2013) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Transcription Factor Family-Based Reconstruction of Singleton Regulons and Study of the Crp/Fnr, ArsR, and GntR Families in Desulfovibrionales Genomes

(2012) A. E. Kazakov et al.   JOURNAL OF BACTERIOLOGY

AdeR, a PucR-Type Transcription Factor, Activates Expression of l-Alanine Dehydrogenase and Is Required for Sporulation of Bacillus subtilis

(2012) Ta-Hui Lin et al.   JOURNAL OF BACTERIOLOGY

The Role of Bacterial Enhancer Binding Proteins as Specialized Activators of  54-Dependent Transcription

(2012) M. Bush et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Comparative analyses imply that the enigmatic sigma factor 54 is a central controller of the bacterial exterior

(2011) Christof Francke et al.   BMC GENOMICS

The Anaerobe-Specific Orange Protein Complex of Desulfovibrio vulgaris Hildenborough Is Encoded by Two Divergent Operons Coregulated by  54 and a Cognate Transcriptional Regulator

(2011) A. Fievet et al.   JOURNAL OF BACTERIOLOGY

Evidence-Based Annotation of Transcripts and Proteins in the Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough

(2011) M. N. Price et al.   JOURNAL OF BACTERIOLOGY

Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium

(2011) Lara Rajeev et al.   GENOME BIOLOGY

Characterization of the NifA-RpoN Regulon in Rhizobium etli in Free Life and in Symbiosis with Phaseolus vulgaris

(2010) E. Salazar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Novel sequence-based method for identifying transcription factor binding sites in prokaryotic genomes

(2010) Gurmukh Sahota et al.   BIOINFORMATICS

T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System

(2010) Daniel Tay et al.   BMC BIOINFORMATICS

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

(2010) P. S. Novichkov et al.   NUCLEIC ACIDS RESEARCH

Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens

(2009) Ching Leang et al.   BMC GENOMICS

 54-mediated control of the mannose phosphotransferase sytem in Lactobacillus plantarum impacts on carbohydrate metabolism

(2009) M. J. A. Stevens et al.   MICROBIOLOGY-SGM

MicrobesOnline: an integrated portal for comparative and functional genomics

(2009) P. S. Dehal et al.   NUCLEIC ACIDS RESEARCH

SUPERFAMILY—sophisticated comparative genomics, data mining, visualization and phylogeny

(2008) Derek Wilson et al.   NUCLEIC ACIDS RESEARCH