Genome-wide characterization of the GRF family and their roles in response to salt stress in Gossypium

Aromatization of natural products by a specialized detoxification enzyme

(2020) Jin-Quan Huang et al.   Nature Chemical Biology

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

(2019) Yan Hu et al.   NATURE GENETICS

Association Analysis of Salt Tolerance in Asiatic cotton (Gossypium arboretum) with SNP Markers

(2019) Tussipkan Dilnur et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Salt‐tolerance diversity in diploid and polyploid cotton ( Gossypium ) species

(2019) Yating Dong et al.   PLANT JOURNAL

Plant salt-tolerance mechanism: A review

(2018) Wenji Liang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits

(2018) Xiongming Du et al.   NATURE GENETICS

Characterization of gossypol biosynthetic pathway

(2018) Xiu Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multidecadal, county-level analysis of the effects of land use, Bt cotton, and weather on cotton pests in China

(2018) Wei Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense

(2018) Maojun Wang et al.   NATURE GENETICS

Molecular Characterization and Expression Profiling of Tomato GRF Transcription Factor Family Genes in Response to Abiotic Stresses and Phytohormones

(2017) Khadiza Khatun et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

20 years of the SMART protein domain annotation resource

(2017) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Transcriptome analysis of three cotton pests reveals features of gene expressions in the mesophyll feeder Apolygus lucorum

(2017) Dianyang Chen et al.   Science China-Life Sciences

A systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation

(2016) Darren Chern Jan Wong et al.   DNA RESEARCH

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Genetic diversity and relationship analysis of Gossypium arboreum accessions

(2015) F. Liu et al.   GENETICS AND MOLECULAR RESEARCH

Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology

(2015) Mohammad Amin Omidbakhshfard et al.   Molecular Plant

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

(2015) Fuguang Li et al.   NATURE BIOTECHNOLOGY

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability

(2015) Michael V. Mickelbart et al.   NATURE REVIEWS GENETICS

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Sp-miR396a-5p acts as a stress-responsive genes regulator by conferring tolerance to abiotic stresses and susceptibility to Phytophthora nicotianae infection in transgenic tobacco

(2015) Lei Chen et al.   PLANT CELL REPORTS

Analyzing serial cDNA libraries revealed reactive oxygen species and gibberellins signaling pathways in the salt response of Upland cotton (Gossypium hirsutum L.)

(2015) Gongyao Shi et al.   PLANT CELL REPORTS

Transcriptome analysis reveals that distinct metabolic pathways operate in salt-tolerant and salt-sensitive upland cotton varieties subjected to salinity stress

(2015) Jinyan Guo et al.   PLANT SCIENCE

Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites

(2015) Xia Liu et al.   Scientific Reports

The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres

(2015) Daojun Yuan et al.   Scientific Reports

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

Genome-wide identification and analysis of the growth-regulating factor family in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

(2014) Fengde Wang et al.   BMC GENOMICS

Effect of salinity stress on plants and its tolerance strategies: a review

(2014) Parul Parihar et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

K+retention in leaf mesophyll, an overlooked component of salinity tolerance mechanism: A case study for barley

(2014) Honghong Wu et al.   Journal of Integrative Plant Biology

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

Genome sequence of the cultivated cotton Gossypium arboreum

(2014) Fuguang Li et al.   NATURE GENETICS

miR396a-Mediated Basic Helix–Loop–Helix Transcription Factor bHLH74 Repression Acts as a Regulator for Root Growth in Arabidopsis Seedlings

(2014) Maolin Bao et al.   PLANT AND CELL PHYSIOLOGY

Phytohormones and plant responses to salinity stress: a review

(2014) Shah Fahad et al.   PLANT GROWTH REGULATION

Post-transcriptional control ofGRFtranscription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity

(2014) Juan M. Debernardi et al.   PLANT JOURNAL

Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX Families of Transcription Factors[W]

(2014) S. J. H. Kuijt et al.   PLANT PHYSIOLOGY

OsmiR396d-Regulated OsGRFs Function in Floral Organogenesis in Rice through Binding to Their Targets OsJMJ706 and OsCR4

(2014) H. Liu et al.   PLANT PHYSIOLOGY

Plant salt-tolerance mechanisms

(2014) Ulrich Deinlein et al.   TRENDS IN PLANT SCIENCE

Genome-wide identification and analysis of growth regulating factor genes in Brachypodium distachyon: in silico approaches

(2014) Ertuğrul FİLİZ et al.   TURKISH JOURNAL OF BIOLOGY

Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3

(2014) Chun-Min Shan et al.   Nature Communications

Evaluation and selection of reliable reference genes for gene expression under abiotic stress in cotton (Gossypium hirsutum L.)

(2013) Min Wang et al.   GENE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

CottonGen: a genomics, genetics and breeding database for cotton research

(2013) Jing Yu et al.   NUCLEIC ACIDS RESEARCH

Ability of leaf mesophyll to retain potassium correlates with salinity tolerance in wheat and barley

(2013) Honghong Wu et al.   PHYSIOLOGIA PLANTARUM

Repression of Growth Regulating Factors by the MicroRNA396 Inhibits Cell Proliferation by UV-B Radiation in Arabidopsis Leaves

(2013) R. Casadevall et al.   PLANT CELL

Molecular Mechanism of microRNA396 Mediating Pistil Development in Arabidopsis

(2013) G. Liang et al.   PLANT PHYSIOLOGY

The BnGRF2 gene (GRF2-like gene from Brassica napus) enhances seed oil production through regulating cell number and plant photosynthesis

(2012) Jing Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

The draft genome of a diploid cotton Gossypium raimondii

(2012) Kunbo Wang et al.   NATURE GENETICS

Novel adult feeding disruption test (FDT) to detect insecticide resistance of lepidopteran pests in cotton

(2012) B van Kretschmar et al.   PEST MANAGEMENT SCIENCE

Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A

(2012) J.-S. Kim et al.   PLANT CELL

The Arabidopsis MicroRNA396-GRF1/GRF3 Regulatory Module Acts as a Developmental Regulator in the Reprogramming of Root Cells during Cyst Nematode Infection

(2012) T. Hewezi et al.   PLANT PHYSIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Arabidopsis MiR396 Mediates the Development of Leaves and Flowers in Transgenic Tobacco

(2009) Fengxi Yang et al.   JOURNAL OF PLANT BIOLOGY

The Arabidopsis GRF-INTERACTING FACTOR Gene Family Performs an Overlapping Function in Determining Organ Size as Well as Multiple Developmental Properties

(2009) B. H. Lee et al.   PLANT PHYSIOLOGY

Isolation and characterization of genes encoding GRF transcription factors and GIF transcriptional coactivators in Maize (Zea mays L.)

(2008) Deng-Feng Zhang et al.   PLANT SCIENCE