Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus

Bacterial vitamin B12 production enhances nematode predatory behavior

(2020) Nermin Akduman et al.   ISME Journal

Conserved nuclear hormone receptors controlling a novel plastic trait target fast-evolving genes expressed in a single cell

(2020) Bogdan Sieriebriennikov et al.   PLoS Genetics

Small peptide–mediated self-recognition prevents cannibalism in predatory nematodes

(2019) James W. Lightfoot et al.   SCIENCE

Evolution of neuronal anatomy and circuitry in two highly divergent nematode species

(2019) Ray L Hong et al.   eLife

New Gene Origin and Deep Taxon Phylogenomics: Opportunities and Challenges

(2019) Christian Rödelsperger et al.   TRENDS IN GENETICS

Crowdsourcing and the feasibility of manual gene annotation: A pilot study in the nematode Pristionchus pacificus

(2019) Christian Rödelsperger et al.   Scientific Reports

Culture-based analysis of Pristionchus-associated microbiota from beetles and figs for studying nematode-bacterial interactions

(2018) Nermin Akduman et al.   PLoS One

A Developmental Switch Generating Phenotypic Plasticity Is Part of a Conserved Multi-gene Locus

(2018) Bogdan Sieriebriennikov et al.   Cell Reports

Phylotranscriptomics of Pristionchus Nematodes Reveals Parallel Gene Loss in Six Hermaphroditic Lineages

(2018) Christian Rödelsperger et al.   CURRENT BIOLOGY

Young genes have distinct gene structure, epigenetic profiles, and transcriptional regulation

(2018) Michael S Werner et al.   GENOME RESEARCH

Deep taxon sampling reveals the evolutionary dynamics of novel gene families in ​Pristionchus nematodes

(2018) Neel Prabh et al.   GENOME RESEARCH

Succession and dynamics of Pristionchus nematodes and their microbiome during decomposition of Oryctes borbonicus on La Réunion Island

(2017) Jan M. Meyer et al.   ENVIRONMENTAL MICROBIOLOGY

Single-Molecule Sequencing Reveals the Chromosome-Scale Genomic Architecture of the Nematode Model Organism Pristionchus pacificus

(2017) Christian Rödelsperger et al.   Cell Reports

Serotonin Drives Predatory Feeding Behavior via Synchronous Feeding Rhythms in the Nematode Pristionchus pacificus

(2017) Misako Okumura et al.   G3-Genes Genomes Genetics

Regulation of hyperoxia-induced social behaviour in Pristionchus pacificus nematodes requires a novel cilia-mediated environmental input

(2017) Eduardo Moreno et al.   Scientific Reports

Are orphan genes protein-coding, prediction artifacts, or non-coding RNAs?

(2016) Neel Prabh et al.   BMC BIOINFORMATICS

First insights into the nature and evolution of antisense transcription in nematodes

(2016) Christian Rödelsperger et al.   BMC EVOLUTIONARY BIOLOGY

The Nuclear Hormone Receptor NHR-40 Acts Downstream of the Sulfatase EUD-1 as Part of a Developmental Plasticity Switch in Pristionchus

(2016) Manuela R. Kieninger et al.   CURRENT BIOLOGY

Functional Conservation and Divergence ofdaf-22Paralogs inPristionchus pacificusDauer Development

(2016) Gabriel V. Markov et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic basis of parasitism in the Strongyloides clade of nematodes

(2016) Vicky L Hunt et al.   NATURE GENETICS

Life History Responses and Gene Expression Profiles of the Nematode Pristionchus pacificus Cultured on Cryptococcus Yeasts

(2016) Gaurav V. Sanghvi et al.   PLoS One

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus

(2015) Praveen Baskaran et al.   BMC EVOLUTIONARY BIOLOGY

The Orphan Gene dauerless Regulates Dauer Development and Intraspecific Competition in Nematodes by Copy Number Variation

(2015) Melanie G. Mayer et al.   PLoS Genetics

Microevolution of Duplications and Deletions and Their Impact on Gene Expression in the Nematode Pristionchus pacificus

(2015) Praveen Baskaran et al.   PLoS One

Opposing Forces of A/T-Biased Mutations and G/C-Biased Gene Conversions Shape the Genome of the NematodePristionchus pacificus

(2014) Andreas M. Weller et al.   GENETICS

The Same or Not the Same: Lineage-Specific Gene Expansions and Homology Relationships in Multigene Families in Nematodes

(2014) Gabriel V. Markov et al.   JOURNAL OF MOLECULAR EVOLUTION

System-wide Rewiring Underlies Behavioral Differences in Predatory and Bacterial-Feeding Nematodes

(2013) Daniel J. Bumbarger et al.   CELL

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

The importance of being regular: Caenorhabditis elegans and Pristionchus pacificus defecation mutants are hypersusceptible to bacterial pathogens

(2012) Robbie Rae et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects

(2011) Christian Rödelsperger et al.   BMC EVOLUTIONARY BIOLOGY

Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus

(2011) Taisei Kikuchi et al.   PLoS Pathogens

Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models

(2010) N. Borchert et al.   GENOME RESEARCH

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

The future of evo–devo: model systems and evolutionary theory

(2009) Ralf J. Sommer   NATURE REVIEWS GENETICS

The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism

(2008) Christoph Dieterich et al.   NATURE GENETICS