Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects

Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover

(2011) Werner E Mayer et al.   BMC EVOLUTIONARY BIOLOGY

Comprehensive cluster analysis with Transitivity Clustering

(2011) Tobias Wittkop et al.   Nature Protocols

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Generation of microsatellite repeat families by RTE retrotransposons in lepidopteran genomes

(2010) Wee Tay et al.   BMC EVOLUTIONARY BIOLOGY

Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models

(2010) N. Borchert et al.   GENOME RESEARCH

Quantitative Assessment of the Nematode Fauna Present on Geotrupes Dung Beetles Reveals Species-Rich Communities with a Heterogeneous Distribution

(2010) Andreas M. Weller et al.   JOURNAL OF PARASITOLOGY

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

(2010) Etienne G. J. Danchin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution

(2010) Sarah Schaack et al.   TRENDS IN ECOLOGY & EVOLUTION

Detection of genomic islands via segmental genome heterogeneity

(2009) Aaron J. Arvey et al.   NUCLEIC ACIDS RESEARCH

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

(2008) Pierre Abad et al.   NATURE BIOTECHNOLOGY

The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism

(2008) Christoph Dieterich et al.   NATURE GENETICS