MCCMF: collaborative matrix factorization based on matrix completion for predicting miRNA-disease associations

Comparative analysis of similarity measurements in miRNAs with applications to miRNA-disease association predictions

(2020) Hailin Chen et al.   BMC BIOINFORMATICS

NPCMF: Nearest Profile-based Collaborative Matrix Factorization method for predicting miRNA-disease associations

(2019) Ying-Lian Gao et al.   BMC BIOINFORMATICS

Prediction and interpretation of miRNA-disease associations based on miRNA target genes using canonical correlation analysis

(2019) Hailin Chen et al.   BMC BIOINFORMATICS

Ensemble of decision tree reveals potential miRNA-disease associations

(2019) Xing Chen et al.   PLoS Computational Biology

WBNPMD: weighted bipartite network projection for microRNA-disease association prediction

(2019) Guobo Xie et al.   Journal of Translational Medicine

Neural inductive matrix completion with graph convolutional networks for miRNA-disease association prediction

(2019) Jin Li et al.   BIOINFORMATICS

BNPMDA: Bipartite Network Projection for MiRNA–Disease Association prediction

(2018) Xing Chen et al.   BIOINFORMATICS

Computational prediction of drug–target interactions using chemogenomic approaches: an empirical survey

(2018) Ali Ezzat et al.   BRIEFINGS IN BIOINFORMATICS

MicroRNA-26a is a key regulon that inhibits progression and metastasis of c-Myc/EZH2 double high advanced hepatocellular carcinoma

(2018) Xiang Zhang et al.   CANCER LETTERS

MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction

(2018) Xing Chen et al.   PLoS Computational Biology

HMDD v3.0: a database for experimentally supported human microRNA–disease associations

(2018) Zhou Huang et al.   NUCLEIC ACIDS RESEARCH

Drug-Target Interaction Prediction with Graph Regularized Matrix Factorization

(2017) Ali Ezzat et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction

(2017) Xing Chen et al.   PLoS Computational Biology

RBMMMDA: predicting multiple types of disease-microRNA associations

(2015) Xing Chen et al.   Scientific Reports

Novel miRNA-31 and miRNA-200a-Mediated Regulation of Retinoblastoma Proliferation

(2015) Vanessa Montoya et al.   PLoS One

Clinical significance of serum miR-223, miR-25 and miR-375 in patients with esophageal squamous cell carcinoma

(2014) Chaohui Wu et al.   MOLECULAR BIOLOGY REPORTS

Semi-supervised learning for potential human microRNA-disease associations inference

(2014) Xing Chen et al.   Scientific Reports

miRCancer: a microRNA-cancer association database constructed by text mining on literature

(2013) B. Xie et al.   BIOINFORMATICS

Protein-driven inference of miRNA-disease associations

(2013) S. Mork et al.   BIOINFORMATICS

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

Using context-specific effect of miRNAs to identify functional associations between miRNAs and gene signatures

(2013) Mohammed Alshalalfa et al.   BMC BIOINFORMATICS

Similarity-based methods for potential human microRNA-disease association prediction

(2013) Hailin Chen et al.   BMC Medical Genomics

HMDD v2.0: a database for experimentally supported human microRNA and disease associations

(2013) Yang Li et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Prediction of microRNAs Associated with Human Diseases Based on Weighted k Most Similar Neighbors

(2013) Ping Xuan et al.   PLoS One

Linearized augmented Lagrangian and alternating direction methods for nuclear norm minimization

(2012) Junfeng Yang et al.   MATHEMATICS OF COMPUTATION

Gaussian interaction profile kernels for predicting drug–target interaction

(2011) Twan van Laarhoven et al.   BIOINFORMATICS

miR-340 inhibition of breast cancer cell migration and invasion through targeting of oncoprotein c-Met

(2011) Zheng-sheng Wu et al.   CANCER

MicroRNAs as potential target gene in cancer gene therapy of gastrointestinal tumors

(2011) Hiroshi Tazawa et al.   EXPERT OPINION ON BIOLOGICAL THERAPY

Prioritizing Candidate Disease miRNAs by Topological Features in the miRNA Target-Dysregulated Network: Case Study of Prostate Cancer

(2011) J. Xu et al.   MOLECULAR CANCER THERAPEUTICS

Prioritizing human cancer microRNAs based on genes’ functional consistency between microRNA and cancer

(2011) Xia Li et al.   NUCLEIC ACIDS RESEARCH

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

dbDEMC: a database of differentially expressed miRNAs in human cancers

(2010) Zhen Yang et al.   BMC GENOMICS

Prioritization of disease microRNAs through a human phenome-microRNAome network

(2010) Qinghua Jiang et al.   BMC Systems Biology

A Singular Value Thresholding Algorithm for Matrix Completion

(2010) Jian-Feng Cai et al.   SIAM JOURNAL ON OPTIMIZATION

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Up-regulated microRNA-143 transcribed by nuclear factor kappa B enhances hepatocarcinoma metastasis by repressing fibronectin expression

(2009) Xiaoying Zhang et al.   HEPATOLOGY

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH

An Analysis of Human MicroRNA and Disease Associations

(2008) Ming Lu et al.   PLoS One