deepDriver: Predicting Cancer Driver Genes Based on Somatic Mutations Using Deep Convolutional Neural Networks

Inherited DNA-Repair Defects in Colorectal Cancer

(2018) Saud H. AlDubayan et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Discovering personalized driver mutation profiles of single samples in cancer by network control strategy

(2018) Wei-Feng Guo et al.   BIOINFORMATICS

Comprehensive Characterization of Cancer Driver Genes and Mutations

(2018) Matthew H. Bailey et al.   CELL

Upregulation of AKAP12 with HDAC3 depletion suppresses the progression and migration of colorectal cancer

(2018) Ping He et al.   INTERNATIONAL JOURNAL OF ONCOLOGY

The lncRNA MALAT1 contributes to non-small cell lung cancer development via modulating miR-124/STAT3 axis

(2018) Sen Li et al.   JOURNAL OF CELLULAR PHYSIOLOGY

KMT2C mediates the estrogen dependence of breast cancer through regulation of ERα enhancer function

(2018) Kinisha Gala et al.   ONCOGENE

A systematic study of the class imbalance problem in convolutional neural networks

(2018) Mateusz Buda et al.   NEURAL NETWORKS

The inhibitory effects of COL1A2 on colorectal cancer cell proliferation, migration, and invasion

(2018) Yifan Yu et al.   Journal of Cancer

The dose-dependent effect of SOX9 and its incidence in colorectal cancer

(2017) Corinne Prévostel et al.   EUROPEAN JOURNAL OF CANCER

High-depth, high-accuracy microsatellite genotyping enables precision lung cancer risk classification

(2017) K R Velmurugan et al.   ONCOGENE

Breast cancer in neurofibromatosis type 1: overrepresentation of unfavourable prognostic factors

(2016) Elina Uusitalo et al.   BRITISH JOURNAL OF CANCER

Clinical and Molecular Characteristics of NF1-Mutant Lung Cancer

(2016) A. J. Redig et al.   CLINICAL CANCER RESEARCH

Fbxw7 Tumor Suppressor

(2016) Jun Cao et al.   MEDICINE

Toward a Shared Vision for Cancer Genomic Data

(2016) Robert L. Grossman et al.   NEW ENGLAND JOURNAL OF MEDICINE

Genenames.org: the HGNC and VGNC resources in 2017

(2016) Bethan Yates et al.   NUCLEIC ACIDS RESEARCH

The BioGRID interaction database: 2017 update

(2016) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

COSMIC: somatic cancer genetics at high-resolution

(2016) Simon A. Forbes et al.   NUCLEIC ACIDS RESEARCH

Evaluating the evaluation of cancer driver genes

(2016) Collin J. Tokheim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Subcellular compartmentalization of docking protein-1 contributes to progression in colorectal cancer

(2016) Teresa Friedrich et al.   EBioMedicine

Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes

(2015) Feixiong Cheng et al.   BRIEFINGS IN BIOINFORMATICS

In Silico Prescription of Anticancer Drugs to Cohorts of 28 Tumor Types Reveals Targeting Opportunities

(2015) Carlota Rubio-Perez et al.   CANCER CELL

Exome Sequencing Reveals AMER1 as a Frequently Mutated Gene in Colorectal Cancer

(2015) R. Sanz-Pamplona et al.   CLINICAL CANCER RESEARCH

Disruption of NCOA2 by recurrent fusion with LACTB2 in colorectal cancer

(2015) J Yu et al.   ONCOGENE

Smad4 loss promotes lung cancer formation but increases sensitivity to DNA topoisomerase inhibitors

(2015) S M Haeger et al.   ONCOGENE

Different prognostic impact of STK11 mutations in non-squamous non-small-cell lung cancer

(2015) Nicolas Pécuchet et al.   Oncotarget

The biological role of actinin-4 (ACTN4) in malignant phenotypes of cancer

(2015) Kazufumi Honda   Cell and Bioscience

Laminin geneLAMB4is somatically mutated and expressionally altered in gastric and colorectal cancers

(2014) Mi Ryoung Choi et al.   APMIS

Discovery and saturation analysis of cancer genes across 21 tumour types

(2014) Michael S. Lawrence et al.   NATURE

Candidate Luminal B Breast Cancer Genes Identified by Genome, Gene Expression and DNA Methylation Profiling

(2014) Stéphanie Cornen et al.   PLoS One

Targeting mTOR network in colorectal cancer therapy

(2014) Xiao-Wen Wang   WORLD JOURNAL OF GASTROENTEROLOGY

DawnRank: discovering personalized driver genes in cancer

(2014) Jack P Hou et al.   Genome Medicine

OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes

(2013) David Tamborero et al.   BIOINFORMATICS

Cumulative Haploinsufficiency and Triplosensitivity Drive Aneuploidy Patterns and Shape the Cancer Genome

(2013) Teresa Davoli et al.   CELL

Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers

(2013) J. Reimand et al.   Molecular Systems Biology

IntOGen-mutations identifies cancer drivers across tumor types

(2013) Abel Gonzalez-Perez et al.   NATURE METHODS

Cancer Genome Landscapes

(2013) B. Vogelstein et al.   SCIENCE

Differentially Expressed Genes Regulating the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer

(2012) S. Lee et al.   CANCER RESEARCH

MuSiC: Identifying mutational significance in cancer genomes

(2012) N. D. Dees et al.   GENOME RESEARCH

Functional impact bias reveals cancer drivers

(2012) Abel Gonzalez-Perez et al.   NUCLEIC ACIDS RESEARCH

CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer

(2011) Wing Chung Wong et al.   BIOINFORMATICS

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

(2009) Prateek Kumar et al.   Nature Protocols

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH