Runs of homozygosity and distribution of functional variants in the cattle genome

Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds

(2015) Qianqian Zhang et al.   BMC GENETICS

Validation of associations for female fertility traits in Nordic Holstein, Nordic Red and Jersey dairy cattle

(2014) Johanna K Höglund et al.   BMC GENETICS

Long Runs of Homozygosity Are Enriched for Deleterious Variation

(2013) Zachary A. Szpiech et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Assessment of the genomic variation in a cattle population by re-sequencing of key animals at low to medium coverage

(2013) Sandra Jansen et al.   BMC GENOMICS

Evaluation of inbreeding depression in Holstein cattle using whole-genome SNP markers and alternative measures of genomic inbreeding

(2013) D.W. Bjelland et al.   JOURNAL OF DAIRY SCIENCE

Effect of Artificial Selection on Runs of Homozygosity in U.S. Holstein Cattle

(2013) Eui-Soo Kim et al.   PLoS One

Genomic Patterns of Homozygosity in Worldwide Human Populations

(2012) Trevor J. Pemberton et al.   AMERICAN JOURNAL OF HUMAN GENETICS

rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

(2012) Mathieu Gautier et al.   BIOINFORMATICS

Runs of homozygosity and population history in cattle

(2012) Deirdre C Purfield et al.   BMC GENETICS

SIFTS: Structure Integration with Function, Taxonomy and Sequences resource

(2012) Sameer Velankar et al.   NUCLEIC ACIDS RESEARCH

Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape

(2012) Mirte Bosse et al.   PLoS Genetics

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping

(2011) Bujie Zhan et al.   BMC GENOMICS

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

(2011) Paul Stothard et al.   BMC GENOMICS

Natural Selection Affects Multiple Aspects of Genetic Variation at Putatively Neutral Sites across the Human Genome

(2011) Kirk E. Lohmueller et al.   PLoS Genetics

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

(2010) William McLaren et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Regions of homozygosity and their impact on complex diseases and traits

(2010) Chee Seng Ku et al.   HUMAN GENETICS

Genomic Runs of Homozygosity Record Population History and Consanguinity

(2010) Mirna Kirin et al.   PLoS One

Selective sweep and the size of the hitchhiking set

(2009) Stephanie Leocard   ADVANCES IN APPLIED PROBABILITY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Erratum

(2009)   JOURNAL OF DAIRY SCIENCE

Extended tracts of homozygosity identify novel candidate genes associated with late-onset Alzheimer’s disease

(2009) M. A. Nalls et al.   NEUROGENETICS

A whole-genome assembly of the domestic cow, Bos taurus

(2009) Aleksey V Zimin et al.   GENOME BIOLOGY

Proportionally more deleterious genetic variation in European than in African populations

(2008) Kirk E. Lohmueller et al.   NATURE