Genomic and phenotypic analysis of siderophore-producing Rhodococcus qingshengii strain S10 isolated from an arid weathered serpentine rock environment

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

(2019) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

M1CR0B1AL1Z3R—a user-friendly web server for the analysis of large-scale microbial genomics data

(2019) Oren Avram et al.   NUCLEIC ACIDS RESEARCH

Estimating Pangenomes with Roary

(2019) Farrah Sitto et al.   MOLECULAR BIOLOGY AND EVOLUTION

Microbial diversity and mineral composition of weathered serpentine rock of the Khalilovsky massif

(2019) Irina V. Khilyas et al.   PLoS One

Compatible Solute Synthesis and Import by the Moderate Halophile Spiribacter salinus: Physiology and Genomics

(2018) María J. León et al.   Frontiers in Microbiology

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

EDGAR 2.0: an enhanced software platform for comparative gene content analyses

(2016) Jochen Blom et al.   NUCLEIC ACIDS RESEARCH

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Beyond iron: non-classical biological functions of bacterial siderophores

(2015) Timothy C. Johnstone et al.   DALTON TRANSACTIONS

Microbial siderophores and their potential applications: a review

(2015) Maumita Saha et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.

(2015) Pavel Švec et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Sequence analysis of 16S rRNA, gyrB and catA genes and DNA-DNA hybridization reveal that Rhodococcus jialingiae is a later synonym of Rhodococcus qingshengii

(2014) A. Tancsics et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus

(2014) Allison L. Creason et al.   Frontiers in Plant Science

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Structural Characterization of the Heterobactin Siderophores from Rhodococcus erythropolis PR4 and Elucidation of Their Biosynthetic Machinery

(2013) Mattia Bosello et al.   JOURNAL OF NATURAL PRODUCTS

Biosynthesis of the Siderophore Rhodochelin Requires the Coordinated Expression of Three Independent Gene Clusters inRhodococcus jostiiRHA1

(2011) Mattia Bosello et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Metals, minerals and microbes: geomicrobiology and bioremediation

(2009) G. M. Gadd   MICROBIOLOGY-SGM

Global Response to Desiccation Stress in the Soil Actinomycete Rhodococcus jostii RHA1

(2008) J. C. LeBlanc et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS