Defining the nitrogen regulated transcriptome of Mycobacterium smegmatis using continuous culture

Survival of mycobacteria depends on proteasome-mediated amino acid recycling under nutrient limitation

(2014) Y. Elharar et al.   EMBO JOURNAL

Nitrogen metabolism in Mycobacterium tuberculosis physiology and virulence

(2014) Alexandre Gouzy et al.   NATURE REVIEWS MICROBIOLOGY

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Mycobacterium tuberculosis Exploits Asparagine to Assimilate Nitrogen and Resist Acid Stress during Infection

(2014) Alexandre Gouzy et al.   PLoS Pathogens

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Deciphering the response of Mycobacterium smegmatis to nitrogen stress using bipartite active modules

(2013) Kerstin J Williams et al.   BMC GENOMICS

Genome wide analysis of the complete GlnR nitrogen-response regulon in Mycobacterium smegmatis

(2013) Victoria A Jenkins et al.   BMC GENOMICS

Mycobacterium tuberculosis nitrogen assimilation and host colonization require aspartate

(2013) Alexandre Gouzy et al.   Nature Chemical Biology

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Adenylylation of mycobacterial Glnk (PII) protein is induced by nitrogen limitation

(2013) Kerstin J. Williams et al.   TUBERCULOSIS

Cholesterol Catabolism by Mycobacterium tuberculosis Requires Transcriptional and Metabolic Adaptations

(2012) Jennifer E. Griffin et al.   CHEMISTRY & BIOLOGY

Regulation of proline metabolism in mycobacteria and its role in carbon metabolism under hypoxia

(2012) Michael Berney et al.   MOLECULAR MICROBIOLOGY

New Insights into the Signaling Mechanism of the pH-responsive, Membrane-integrated Transcriptional Activator CadC ofEscherichia coli

(2011) Ina Haneburger et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Streptomyces coelicolor GlnR regulon: identification of new GlnR targets and evidence for a central role of GlnR in nitrogen metabolism in actinomycetes

(2010) Yvonne Tiffert et al.   MOLECULAR MICROBIOLOGY

Unique Flexibility in Energy Metabolism Allows Mycobacteria to Combat Starvation and Hypoxia

(2010) Michael Berney et al.   PLoS One

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Small regulatory non-coding RNAs in bacteria: physiology and mechanistic aspects

(2009) Francis Repoila et al.   BIOLOGY OF THE CELL

The PII Superfamily Revised: A Novel Group and Evolutionary Insights

(2009) Fernando Hayashi Sant’Anna et al.   JOURNAL OF MOLECULAR EVOLUTION

BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

(2008) Tim Hulsen et al.   BMC GENOMICS

A Genomic View on Nitrogen Metabolism and Nitrogen Control in Mycobacteria

(2008) Johannes Amon et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY