Comparative transcriptome analysis within the Lolium/Festuca species complex reveals high sequence conservation

Vernalization Mediated Changes in the Lolium perenne Transcriptome

(2014) Cristiana Paina et al.   PLoS One

De Novo Assembly of the Perennial Ryegrass Transcriptome Using an RNA-Seq Strategy

(2014) Jacqueline D. Farrell et al.   PLoS One

Mediterranean origin and Miocene-Holocene Old World diversification of meadow fescues and ryegrasses (FestucasubgenusSchedonorusandLolium)

(2013) Luis A. Inda et al.   JOURNAL OF BIOGEOGRAPHY

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity inLolium perenne

(2013) Tom Ruttink et al.   PLANT BIOTECHNOLOGY JOURNAL

De Novo Transcriptome Sequence Assembly and Analysis of RNA Silencing Genes of Nicotiana benthamiana

(2013) Kenlee Nakasugi et al.   PLoS One

Designing a transcriptome next-generation sequencing project for a nonmodel plant species1

(2012) Susan R. Strickler et al.   AMERICAN JOURNAL OF BOTANY

Differential expression of VRN1 and other MADS-box genes in Festuca pratensis selections with different vernalization requirements

(2012) Å. Ergon et al.   BIOLOGIA PLANTARUM

Slow but not low: genomic comparisons reveal slower evolutionary rate and higher dN/dS in conifers compared to angiosperms

(2012) Emmanuel Buschiazzo et al.   BMC EVOLUTIONARY BIOLOGY

Genomic characteristics of a diploid F4 festulolium hybrid (Lolium multiflorum × Festuca arundinacea)

(2012) Yukio Akiyama et al.   GENOME

The genetic basis of flowering responses to seasonal cues

(2012) Fernando Andrés et al.   NATURE REVIEWS GENETICS

MIPS PlantsDB: a database framework for comparative plant genome research

(2012) Thomas Nussbaumer et al.   NUCLEIC ACIDS RESEARCH

Wheat TILLING Mutants Show That the Vernalization Gene VRN1 Down-Regulates the Flowering Repressor VRN2 in Leaves but Is Not Essential for Flowering

(2012) Andrew Chen et al.   PLoS Genetics

Alien introgression in the grasses Lolium perenne (perennial ryegrass) and Festuca pratensis (meadow fescue): the development of seven monosomic substitution lines and their molecular and cytological characterization

(2011) John Harper et al.   ANNALS OF BOTANY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

(2011) Tina T Hu et al.   NATURE GENETICS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Evolutionary history of tall fescue morphotypes inferred from molecular phylogenetics of the Lolium-Festuca species complex

(2010) Melanie L Hand et al.   BMC EVOLUTIONARY BIOLOGY

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Comparative Genomics of Flowering Time Pathways Using Brachypodium distachyon as a Model for the Temperate Grasses

(2010) Janet A. Higgins et al.   PLoS One

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic perspectives on crop domestication

(2010) Briana L. Gross et al.   TRENDS IN PLANT SCIENCE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

(2009) Iain MacCallum et al.   GENOME BIOLOGY

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

Genetic and Molecular Characterization of the VRN2 Loci in Tetraploid Wheat

(2008) A. Distelfeld et al.   PLANT PHYSIOLOGY

Poaceae Genomes: Going from Unattainable to Becoming a Model Clade for Comparative Plant Genomics

(2008) C. R. Buell   PLANT PHYSIOLOGY