Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity inLolium perenne
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity inLolium perenne
Authors
Keywords
-
Journal
PLANT BIOTECHNOLOGY JOURNAL
Volume 11, Issue 5, Pages 605-617
Publisher
Wiley
Online
2013-02-22
DOI
10.1111/pbi.12051
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species
- (2012) Daniel C. Ilut et al. AMERICAN JOURNAL OF BOTANY
- Designing a transcriptome next-generation sequencing project for a nonmodel plant species1
- (2012) Susan R. Strickler et al. AMERICAN JOURNAL OF BOTANY
- Strategies for transcriptome analysis in nonmodel plants
- (2012) Judson A. Ward et al. AMERICAN JOURNAL OF BOTANY
- A transcriptome map of perennial ryegrass (Lolium perenne L.)
- (2012) Bruno Studer et al. BMC GENOMICS
- Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data
- (2012) Jialei Duan et al. BMC GENOMICS
- Targeted re-sequencing of the allohexaploid wheat exome
- (2012) Mark O. Winfield et al. PLANT BIOTECHNOLOGY JOURNAL
- The Perennial Ryegrass GenomeZipper: Targeted Use of Genome Resources for Comparative Grass Genomics
- (2012) M. Pfeifer et al. PLANT PHYSIOLOGY
- Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph
- (2011) Z. Li et al. Briefings in Functional Genomics
- De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification
- (2011) R. Garg et al. DNA RESEARCH
- The phylogeny of the BEP clade in grasses revisited: Evidence from the whole-genome sequences of chloroplasts
- (2011) Zhi-Qiang Wu et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Next-generation transcriptome assembly
- (2011) Jeffrey A. Martin et al. NATURE REVIEWS GENETICS
- Unlocking the Barley Genome by Chromosomal and Comparative Genomics
- (2011) Klaus F.X. Mayer et al. PLANT CELL
- Comprehensive Sequence Analysis of 24,783 Barley Full-Length cDNAs Derived from 12 Clone Libraries
- (2011) T. Matsumoto et al. PLANT PHYSIOLOGY
- Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform
- (2011) M. Van Bel et al. PLANT PHYSIOLOGY
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Optimization of de novo transcriptome assembly from next-generation sequencing data
- (2010) Y. Surget-Groba et al. GENOME RESEARCH
- Assembly algorithms for next-generation sequencing data
- (2010) Jason R. Miller et al. GENOMICS
- Genome sequencing and analysis of the model grass Brachypodium distachyon
- (2010) John P. Vogel et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
- (2010) Mitchell Guttman et al. NATURE BIOTECHNOLOGY
- The genome of the domesticated apple (Malus × domestica Borkh.)
- (2010) Riccardo Velasco et al. NATURE GENETICS
- Target-enrichment strategies for next-generation sequencing
- (2010) Lira Mamanova et al. NATURE METHODS
- De Novo Analysis of Transcriptome Dynamics in the Migratory Locust during the Development of Phase Traits
- (2010) Shuang Chen et al. PLoS One
- Sequence diversity in three tomato species: SNPs, markers, and molecular evolution
- (2009) José M Jiménez-Gómez et al. BMC PLANT BIOLOGY
- Development of 5006 Full-Length CDNAs in Barley: A Tool for Accessing Cereal Genomics Resources
- (2009) K. Sato et al. DNA RESEARCH
- Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery
- (2009) Stéphane Deschamps et al. MOLECULAR BREEDING
- Sense from sequence reads: methods for alignment and assembly
- (2009) Paul Flicek et al. NATURE METHODS
- PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants
- (2009) S. Proost et al. PLANT CELL
- Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
- (2009) K. L. McNally et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The flowering world: a tale of duplications
- (2009) Yves Van de Peer et al. TRENDS IN PLANT SCIENCE
- Sequencing and assembly of highly heterozygous genome of Vitis vinifera L. cv Pinot Noir: Problems and solutions
- (2008) Andrey Zharkikh et al. JOURNAL OF BIOTECHNOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now