Flood resilience loci SUBMERGENCE 1 and ANAEROBIC GERMINATION 1 interact in seedlings established underwater

After The Deluge: Plant Revival Post-Flooding

(2019) Elaine Yeung et al.   TRENDS IN PLANT SCIENCE

Regulatory cascade involving transcriptional and N-end rule pathways in rice under submergence

(2019) Chih-Cheng Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dissection of coleoptile elongation in japonica rice under submergence through integrated genome‐wide association mapping and transcriptional analyses

(2019) Khac Nhu Nghi et al.   PLANT CELL AND ENVIRONMENT

Default activation and nuclear translocation of the plant cellular energy sensor SnRK1 regulate metabolic stress responses and development.

(2019) Matthew Ramon et al.   PLANT CELL

Increasing flooding tolerance in rice: combining tolerance of submergence and of stagnant flooding

(2019) Yoichiro Kato et al.   ANNALS OF BOTANY

Sugar starvation-regulated MYBS2 and 14-3-3 protein interactions enhance plant growth, stress tolerance, and grain weight in rice

(2019) Yi-Shih Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1 ) and contribute to flood tolerance

(2018) Yusuke Kurokawa et al.   NEW PHYTOLOGIST

Trehalose 6-Phosphate Regulates Photosynthesis and Assimilate Partitioning in Reproductive Tissue

(2018) Maria Oszvald et al.   PLANT PHYSIOLOGY

The role of trehalose 6-phosphate in crop yield and resilience

(2018) Matthew J. Paul et al.   PLANT PHYSIOLOGY

A stress recovery signaling network for enhanced flooding tolerance inArabidopsis thaliana

(2018) Elaine Yeung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice

(2018) Niharika Sharma et al.   Rice

Optimizing Sowing and Flooding Depth for Anaerobic Germination-Tolerant Genotypes to Enhance Crop Establishment, Early Growth, and Weed Management in Dry-Seeded Rice (Oryza sativa L.)

(2018) Buddhika Sampath Chamara et al.   Frontiers in Plant Science

Rice SUB1A constrains remodelling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery

(2017) Anna M. Locke et al.   PLANT CELL AND ENVIRONMENT

ROS Are Good

(2017) Ron Mittler   TRENDS IN PLANT SCIENCE

systemPipeR: NGS workflow and report generation environment

(2016) Tyler W. H. Backman et al.   BMC BIOINFORMATICS

Mapping additional QTLs from FR13A to increase submergence tolerance in rice beyond SUB1

(2016) Zennia Jean C. Gonzaga et al.   EUPHYTICA

A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN-ACTIVATED PROTEIN KINASE3 Imparts Submergence Tolerance in Rice

(2016) Pallavi Singh et al.   PLANT CELL

A Tale of Two Sugars: Trehalose 6-Phosphate and Sucrose

(2016) Carlos M. Figueroa et al.   PLANT PHYSIOLOGY

From QTL to variety-harnessing the benefits of QTLs for drought, flood and salt tolerance in mega rice varieties of India through a multi-institutional network

(2016) Renu Singh et al.   PLANT SCIENCE

Molecular Evolution and Functional Diversification of Replication Protein A1 in Plants

(2016) Behailu B. Aklilu et al.   Frontiers in Plant Science

Allelic diversity of newly characterized submergence-tolerant rice (Oryza sativa L.) germplasm from Bangladesh

(2015) Khandakar M. Iftekharuddaula et al.   GENETIC RESOURCES AND CROP EVOLUTION

Co-option of developmentally regulated plant SWEET transporters for pathogen nutrition and abiotic stress tolerance

(2015) Divya Chandran   IUBMB LIFE

Expression of trehalose-6-phosphate phosphatase in maize ears improves yield in well-watered and drought conditions

(2015) Michael L Nuccio et al.   NATURE BIOTECHNOLOGY

Flood adaptive traits and processes: an overview

(2015) Laurentius A. C. J. Voesenek et al.   NEW PHYTOLOGIST

The key regulator of submergence tolerance, SUB1A , promotes photosynthetic and metabolic recovery from submergence damage in rice leaves

(2015) Jasper Benedict Alpuerto et al.   PLANT CELL AND ENVIRONMENT

Mechanisms of growth and patterns of gene expression in oxygen-deprived rice coleoptiles

(2015) Reena Narsai et al.   PLANT JOURNAL

A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice

(2015) Tobias Kretzschmar et al.   Nature Plants

Accelerating the development of new submergence tolerant rice varieties: the case of Ciherang-Sub1 and PSB Rc18-Sub1

(2014) Endang M. Septiningsih et al.   EUPHYTICA

Gas film retention and underwater photosynthesis during field submergence of four contrasting rice genotypes

(2014) Anders Winkel et al.   JOURNAL OF EXPERIMENTAL BOTANY

The sucrose–trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P

(2014) Umesh Prasad Yadav et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparison of starch granule development and physicochemical properties of starches in wheat pericarp and endosperm

(2014) Xurun Yu et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Metabolic adaptation to sugar/O2deficiency for anaerobic germination and seedling growth in rice

(2014) KUO-WEI LEE et al.   PLANT CELL AND ENVIRONMENT

RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa)

(2014) Katsuhiro Shiono et al.   PLANT JOURNAL

The contribution of submergence-tolerant (Sub1) rice varieties to food security in flood-prone rainfed lowland areas in Asia

(2013) Abdelbagi M. Ismail et al.   FIELD CROPS RESEARCH

SWEET sugar transporters for phloem transport and pathogen nutrition

(2013) Li-Qing Chen   NEW PHYTOLOGIST

SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway

(2013) Aaron J. Schmitz et al.   NEW PHYTOLOGIST

Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis

(2013) P. Juntawong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red

(2013) Endang M. Septiningsih et al.   THEORETICAL AND APPLIED GENETICS

Global flood risk under climate change

(2013) Yukiko Hirabayashi et al.   Nature Climate Change

Internal aeration of paddy field rice (Oryza sativa) during complete submergence - importance of light and floodwater O2

(2012) Anders Winkel et al.   NEW PHYTOLOGIST

Convergent Starvation Signals and Hormone Crosstalk in Regulating Nutrient Mobilization upon Germination in Cereals

(2012) Y.-F. Hong et al.   PLANT CELL

Adaptation to flooding during emergence and seedling growth in rice and weeds, and implications for crop establishment

(2012) Abdelbagi M. Ismail et al.   AoB Plants

Initiation of DNA replication: functional and evolutionary aspects

(2011) John A. Bryant et al.   ANNALS OF BOTANY

Identification and characterization of a rice MCM2 homologue required for DNA replycation

(2011) Jae-Han Cho et al.   BMB Reports

The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice

(2011) Takeshi Fukao et al.   PLANT CELL

A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq

(2011) Lin Wang et al.   PLoS One

Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru

(2011) Endang M. Septiningsih et al.   THEORETICAL AND APPLIED GENETICS

Rapid and high-precision marker assisted backcrossing to introgress the SUB1 QTL into BR11, the rainfed lowland rice mega variety of Bangladesh

(2010) K. M. Iftekharuddaula et al.   EUPHYTICA

The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors

(2010) K.-H. Jung et al.   PLANT PHYSIOLOGY

Cross-Kingdom Comparison of Transcriptomic Adjustments to Low-Oxygen Stress Highlights Conserved and Plant-Specific Responses

(2010) A. Mustroph et al.   PLANT PHYSIOLOGY

Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A

(2010) Namrata Singh et al.   THEORETICAL AND APPLIED GENETICS

Submergence Tolerant Rice: SUB1’s Journey from Landrace to Modern Cultivar

(2010) Julia Bailey-Serres et al.   Rice

Submergence tolerance in relation to variable floodwater conditions in rice

(2009) Krishna Kaveri Das et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.)

(2009) S. Abdolhamid Angaji et al.   EUPHYTICA

Ectopic Overexpression of The Transcription Factor OsGLK1 Induces Chloroplast Development in Non-Green Rice Cells

(2009) Hidemitsu Nakamura et al.   PLANT AND CELL PHYSIOLOGY

Inhibition of SNF1-Related Protein Kinase1 Activity and Regulation of Metabolic Pathways by Trehalose-6-Phosphate

(2009) Y. Zhang et al.   PLANT PHYSIOLOGY

Coordinated Responses to Oxygen and Sugar Deficiency Allow Rice Seedlings to Tolerate Flooding

(2009) K.-W. Lee et al.   Science Signaling

Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa)

(2008) Abdelbagi M. Ismail et al.   ANNALS OF BOTANY

Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond

(2008) Endang M. Septiningsih et al.   ANNALS OF BOTANY

Flooding Stress: Acclimations and Genetic Diversity

(2008) J. Bailey-Serres et al.   Annual Review of Plant Biology

Underwater photosynthesis and respiration in leaves of submerged wetland plants: gas films improve CO2and O2exchange

(2008) Timothy David Colmer et al.   NEW PHYTOLOGIST

Comparative analysis of anoxic coleoptile elongation in rice varieties: relationship between coleoptile length and carbohydrate levels, fermentative metabolism and anaerobic gene expression

(2008) L. Magneschi et al.   PLANT BIOLOGY

Surviving floods: leaf gas films improve O2 and CO2 exchange, root aeration, and growth of completely submerged rice

(2008) Ole Pedersen et al.   PLANT JOURNAL

Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice

(2008) T. Fukao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA