Mandarin fish (Sinipercidae) genomes provide insights into innate predatory feeding

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

(2019) Alexey M Kozlov et al.   BIOINFORMATICS

Meta-analysis of chromosome-scale crossover rate variation in eukaryotes and its significance to evolutionary genomics

(2018) Quiterie Haenel et al.   MOLECULAR ECOLOGY

Human sex reversal is caused by duplication or deletion of core enhancers upstream of SOX9

(2018) Brittany Croft et al.   Nature Communications

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Gill Morphology in Two Bottom Feeder Mediterranean Sea Fishes: Grey Gurnard Fish (Eutrigla gurnardus, Linnaeus, 1758) and Striped Red Mullet Fish (Mullus barbatus surmuletus, Linnaeus, 1758) by Scanning Electron Microscopy

(2017) Mohamed M. A Abumandour et al.   INTERNATIONAL JOURNAL OF MORPHOLOGY

Species delimitation and phylogenetic reconstruction of the sinipercids (Perciformes: Sinipercidae) based on target enrichment of thousands of nuclear coding sequences

(2017) Shuli Song et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Identification of differentially expressed genes associated with differential body size in mandarin fish (Siniperca chuatsi)

(2016) Changxu Tian et al.   GENETICA

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

(2016) Shubha Vij et al.   PLoS Genetics

Effect of cultivated copepods (Acartia tonsa) in first-feeding of Atlantic cod (Gadus morhua) and ballan wrasse (Labrus bergylta) larvae

(2015) G. Øie et al.   AQUACULTURE NUTRITION

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection

(2015) Martin D. Smith et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Genome 10K Project: A Way Forward

(2015) Klaus-Peter Koepfli et al.   Annual Review of Animal Biosciences

Split-alignment of genomes finds orthologies more accurately

(2015) Martin C Frith et al.   GENOME BIOLOGY

Ragout--a reference-assisted assembly tool for bacterial genomes

(2014) M. Kolmogorov et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

(2014) Marten Boetzer et al.   BMC BIOINFORMATICS

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

(2014) Mbaye Tine et al.   Nature Communications

Parallel developmental genetic features underlie stickleback gill raker evolution

(2014) Andrew M Glazer et al.   EvoDevo

Kirrel3 is required for the coalescence of vomeronasal sensory neuron axons into glomeruli and for male-male aggression

(2013) J. E. A. Prince et al.   DEVELOPMENT

Experimental evidence for trait utility of gill raker number in adaptive radiation of a north temperate fish

(2013) C. Roesch et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Deficiency of Asparagine Synthetase Causes Congenital Microcephaly and a Progressive Form of Encephalopathy

(2013) Elizabeth K. Ruzzo et al.   NEURON

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Npas4: A Neuronal Transcription Factor with a Key Role in Social and Cognitive Functions Relevant to Developmental Disorders

(2012) Laurence Coutellier et al.   PLoS One

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

(2011) Vincent Ranwez et al.   PLoS One

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

Live feeds for early stages of fish rearing

(2009) Luís E C Conceição et al.   AQUACULTURE RESEARCH

Distinct freshwater and seawater isoforms of Na+/K+-ATPase in gill chloride cells of Atlantic salmon

(2009) S. D. McCormick et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Muscle genome-wide expression profiling during disease evolution in mdx mice

(2009) Mario Marotta et al.   PHYSIOLOGICAL GENOMICS

Transcriptional Regulator BPTF/FAC1 Is Essential for Trophoblast Differentiation during Early Mouse Development

(2008) T. Goller et al.   MOLECULAR AND CELLULAR BIOLOGY

Fission and fusion of Darwin's finches populations

(2008) B.R. Grant et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Zebrafish eda and edar Mutants Reveal Conserved and Ancestral Roles of Ectodysplasin Signaling in Vertebrates

(2008) Matthew P. Harris et al.   PLoS Genetics

High-resolution in situ hybridization to whole-mount zebrafish embryos

(2007) Christine Thisse et al.   Nature Protocols