The Salmonella enterica Plasmidome as a Reservoir of Antibiotic Resistance

High Genetic Plasticity in Multidrug-Resistant Sequence Type 3-IncHI2 Plasmids Revealed by Sequence Comparison and Phylogenetic Analysis

(2018) Liang-Xing Fang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Evaluation of the Genetics and Functionality of Plasmids in Incompatibility Group I1-Positive Salmonella enterica

(2018) Pravin R. Kaldhone et al.   Foodborne Pathogens and Disease

Impact of co-carriage of IncA/C plasmids with additional plasmids on the transfer of antimicrobial resistance in Salmonella enterica isolates

(2018) Jing Han et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae

(2018) M Rozwandowicz et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

UniProt: the universal protein knowledgebase

(2018) The UniProt Consortium   NUCLEIC ACIDS RESEARCH

A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies

(2017) Sagar M. Utturkar et al.   Frontiers in Microbiology

A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis

(2017) Jean-Guillaume Emond-Rheault et al.   Frontiers in Microbiology

Tet(C) Gene Transfer between Chlamydia suis Strains Occurs by Homologous Recombination after Co-infection: Implications for Spread of Tetracycline-Resistance among Chlamydiaceae

(2017) Hanna Marti et al.   Frontiers in Microbiology

Recycler: an algorithm for detecting plasmids fromde novoassembly graphs

(2016) Roye Rozov et al.   BIOINFORMATICS

plasmidSPAdes: assembling plasmids from whole genome sequencing data

(2016) Dmitry Antipov et al.   BIOINFORMATICS

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

(2016) Catherine E. Yoshida et al.   PLoS One

The Challenge of Efflux-Mediated Antibiotic Resistance in Gram-Negative Bacteria

(2015) Xian-Zhi Li et al.   CLINICAL MICROBIOLOGY REVIEWS

High-level fluoroquinolone resistant Salmonella enterica serovar Kentucky ST198 epidemic clone with IncA/C conjugative plasmid carrying blaCTX-M-25 gene

(2015) Dariusz Wasyl et al.   VETERINARY MICROBIOLOGY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Sequence analysis of a CTX-M-1 IncI1 plasmid found in Salmonella 4,5,12:i:−, Escherichia coli and Klebsiella pneumoniae on a UK pig farm

(2014) Irene Freire Martín et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Plasmid Flux in Escherichia coli ST131 Sublineages, Analyzed by Plasmid Constellation Network (PLACNET), a New Method for Plasmid Reconstruction from Whole Genome Sequences

(2014) Val F. Lanza et al.   PLoS Genetics

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The plasmidome of a Salmonella enterica serovar Derby isolated from pork meat

(2013) Anne Bleicher et al.   PLASMID

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Antimicrobial Resistance of Salmonella Serovars Isolated from Beef at Retail Markets in the North Vietnam

(2012) Truong Ha THAI et al.   JOURNAL OF VETERINARY MEDICAL SCIENCE

DNA Sequence Analysis of Plasmids from Multidrug Resistant Salmonella enterica Serotype Heidelberg Isolates

(2012) Jing Han et al.   PLoS One

CTX-M Enzymes: Origin and Diffusion

(2012) Rafael Cantón et al.   Frontiers in Microbiology

Outpatient treatment of patients with enteric fever

(2011) Nicholas J Beeching et al.   LANCET INFECTIOUS DISEASES

Repetitive DNA and next-generation sequencing: computational challenges and solutions

(2011) Todd J. Treangen et al.   NATURE REVIEWS GENETICS

The Role of the spv Genes in Salmonella Pathogenesis

(2011) Donald G. Guiney et al.   Frontiers in Microbiology

In Vitro Activity of Azithromycin against Nontyphoidal Salmonella enterica

(2010) M. Gunell et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data

(2010) Fengfeng Zhou et al.   BIOINFORMATICS

Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants

(2010) Laura Villa et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

blaCMY-2-Positive IncA/C Plasmids from Escherichia coli and Salmonella enterica Are a Distinct Component of a Larger Lineage of Plasmids

(2009) D. R. Call et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Resistance Plasmid Families in Enterobacteriaceae

(2009) A. Carattoli   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Inc A/C Plasmids Are Prevalent in Multidrug-Resistant Salmonella enterica Isolates

(2009) R. L. Lindsey et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Genomics of the IncA/C Multidrug Resistance Plasmid Family

(2009) W. F. Fricke et al.   JOURNAL OF BACTERIOLOGY

Multilocus sequence typing of IncI1 plasmids carrying extended-spectrum β-lactamases in Escherichia coli and Salmonella of human and animal origin

(2008) Aurora García-Fernández et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY