Hawaiian Bobtail Squid Symbionts Inhibit Marine Bacteria via Production of Specialized Metabolites, Including New Bromoalterochromides BAC-D/D′

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Shielding the Next Generation: Symbiotic Bacteria from a Reproductive Organ Protect Bobtail Squid Eggs from Fungal Fouling

(2019) Allison H. Kerwin et al.   mBio

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Symbiotic bacteria associated with a bobtail squid reproductive system are detectable in the environment, and stable in the host and developing eggs

(2017) Allison H. Kerwin et al.   ENVIRONMENTAL MICROBIOLOGY

Where less may be more: how the rare biosphere pulls ecosystems strings

(2017) Alexandre Jousset et al.   ISME Journal

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Physiological and genomic features of a novel violacein-producing bacterium isolated from surface seawater

(2017) Yue-Hong Wu et al.   PLoS One

C3 and 2D C3 Marfey’s Methods for Amino Acid Analysis in Natural Products

(2016) Soumini Vijayasarathy et al.   JOURNAL OF NATURAL PRODUCTS

Biological Potential of Chitinolytic Marine Bacteria

(2016) Sara Paulsen et al.   Marine Drugs

Spotlight on Antimicrobial Metabolites from the Marine Bacteria Pseudoalteromonas: Chemodiversity and Ecological Significance

(2016) Clément Offret et al.   Marine Drugs

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios

(2016) Samantha M. Gromek et al.   Frontiers in Microbiology

Non-random species loss in bacterial communities reduces antifungal volatile production

(2015) W. H. Gera Hol et al.   ECOLOGY

Arthroamide, a Cyclic Depsipeptide with Quorum Sensing Inhibitory Activity from Arthrobacter sp.

(2015) Yasuhiro Igarashi et al.   JOURNAL OF NATURAL PRODUCTS

Modulation of violacein production and phenotypes associated with biofilm by exogenous quorum sensing N-acylhomoserine lactones in the marine bacterium Pseudoalteromonas ulvae TC14

(2015) Armande Mireille Ayé et al.   MICROBIOLOGY-SGM

Minimum Information about a Biosynthetic Gene cluster

(2015) Marnix H Medema et al.   Nature Chemical Biology

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes

(2015) Andrew J. Collins et al.   Frontiers in Microbiology

Microbiota of Healthy Corals Are Active against Fungi in a Light-Dependent Manner

(2014) Wilna J. Moree et al.   ACS Chemical Biology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Bacteria–bacteria interactions within the microbiota of the ancestral metazoan Hydra contribute to fungal resistance

(2014) Sebastian Fraune et al.   ISME Journal

A Coralline Algal-Associated Bacterium, Pseudoalteromonas Strain J010, Yields Five New Korormicins and a Bromopyrrole

(2014) Jan Tebben et al.   Marine Drugs

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Biosynthesis of polybrominated aromatic organic compounds by marine bacteria

(2014) Vinayak Agarwal et al.   Nature Chemical Biology

Targeted Capture and Heterologous Expression of the Pseudoalteromonas Alterochromide Gene Cluster in Escherichia coli Represents a Promising Natural Product Exploratory Platform

(2014) Avena C. Ross et al.   ACS Synthetic Biology

Toxicity of Bioactive and Probiotic Marine Bacteria and Their Secondary Metabolites in Artemia sp. and Caenorhabditis elegans as Eukaryotic Model Organisms

(2013) Anna Katrin Neu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome analysis of Pseudoalteromonas flavipulchra JG1 reveals various survival advantages in marine environment

(2013) Min Yu et al.   BMC GENOMICS

MS/MS networking guided analysis of molecule and gene cluster families

(2013) D. D. Nguyen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and Partitioning of Bacterial Populations within the Accessory Nidamental Gland of the Squid Euprymna scolopes

(2012) Andrew J. Collins et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Coibacins A–D, Antileishmanial Marine Cyanobacterial Polyketides with Intriguing Biosynthetic Origins

(2012) Marcy J. Balunas et al.   ORGANIC LETTERS

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

(2012) Andrew Tritt et al.   PLoS One

Recruitment in the sea: bacterial genes required for inducing larval settlement in a polychaete worm

(2012) Ying Huang et al.   Scientific Reports

Marine Bacteria from Danish Coastal Waters Show Antifouling Activity against the Marine Fouling Bacterium Pseudoalteromonas sp. Strain S91 and Zoospores of the Green Alga Ulva australis Independent of Bacteriocidal Activity

(2011) Nete Bernbom et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bioactivity, Chemical Profiling, and 16S rRNA-Based Phylogeny of Pseudoalteromonas Strains Collected on a Global Research Cruise

(2011) Nikolaj G. Vynne et al.   MARINE BIOTECHNOLOGY

Purification and characterization of antibacterial compounds of Pseudoalteromonas flavipulchra JG1

(2011) M. Yu et al.   MICROBIOLOGY-SGM

A Natural Plasmid Uniquely Encodes Two Biosynthetic Pathways Creating a Potent Anti-MRSA Antibiotic

(2011) Daisuke Fukuda et al.   PLoS One

Induction of Larval Metamorphosis of the Coral Acropora millepora by Tetrabromopyrrole Isolated from a Pseudoalteromonas Bacterium

(2011) Jan Tebben et al.   PLoS One

Characterizing the Host and Symbiont Proteomes in the Association between the Bobtail Squid, Euprymna scolopes, and the Bacterium, Vibrio fischeri

(2011) Tyler R. Schleicher et al.   PLoS One

Identification of a marine antagonistic strain JG1 and establishment of a polymerase chain reaction detection technique based on the gyrB gene

(2010) Guang Jin et al.   AQUACULTURE RESEARCH

Agar-Based Disk Diffusion Assay for Susceptibility Testing of Dermatophytes

(2010) E. I. Nweze et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Vibrio fischeri flavohaemoglobin protects against nitric oxide during initiation of the squid-Vibrio symbiosis

(2010) Yanling Wang et al.   MOLECULAR MICROBIOLOGY

Symbiotic streptomycetes provide antibiotic combination prophylaxis for wasp offspring

(2010) Johannes Kroiss et al.   Nature Chemical Biology

Bacteria on housefly eggs, Musca domestica, suppress fungal growth in chicken manure through nutrient depletion or antifungal metabolites

(2009) Kevin Lam et al.   NATURWISSENSCHAFTEN

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

“Pseudoalteromonas januaria” SUT 11 as the Source of Rare Lipodepsipeptides

(2008) Nataliya I. Kalinovskaya et al.   CURRENT MICROBIOLOGY