Combined analysis of DNA methylome and transcriptome reveal novel candidate genes with susceptibility to bovine Staphylococcus aureus subclinical mastitis

Bovine mastitis Staphylococcus aureus: Antibiotic susceptibility profile, resistance genes and molecular typing of methicillin-resistant and methicillin-sensitive strains in China

(2015) Dengfeng Wang et al.   INFECTION GENETICS AND EVOLUTION

Reference Gene Validation for RT-qPCR, a Note on Different Available Software Packages

(2015) Ward De Spiegelaere et al.   PLoS One

Erratum: CORRIGENDUM: DNA methylome in spleen of avian pathogenic escherichia coli-challenged broilers and integration with mRNA expression

(2015) Haiping Xu et al.   Scientific Reports

Beyond cleaved small RNA targets: unraveling the complexity of plant RNA degradome data

(2014) Cheng-Yu Hou et al.   BMC GENOMICS

Folic acid stimulation of neural stem cell proliferation is associated with altered methylation profile of PI3K/Akt/CREB

(2014) Min Yu et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Genome-Wide DNA Methylation Patterns and Transcription Analysis in Sheep Muscle

(2014) Christine Couldrey et al.   PLoS One

Quality assessment and data handling methods for Affymetrix Gene 1.0 ST arrays with variable RNA integrity

(2013) Katie S Viljoen et al.   BMC GENOMICS

Aberrant promoter methylation of the CD4 gene in peripheral blood cells of mastitic dairy cows

(2013) X.S. Wang et al.   GENETICS AND MOLECULAR RESEARCH

Deep Sequencing-Based Transcriptional Analysis of Bovine Mammary Epithelial Cells Gene Expression in Response to In Vitro Infection with Staphylococcus aureus Stains

(2013) Xiao Wang et al.   PLoS One

Staphylococcus aureus Degrades Neutrophil Extracellular Traps to Promote Immune Cell Death

(2013) V. Thammavongsa et al.   SCIENCE

Staphylococcus aureus and Escherichia coli elicit different innate immune responses from bovine mammary epithelial cells

(2013) Yunhe Fu et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression

(2012) S. A. Selamat et al.   GENOME RESEARCH

Manageable risk factors associated with the lactational incidence, elimination, and prevalence of Staphylococcus aureus intramammary infections in dairy cows

(2012) S. Dufour et al.   JOURNAL OF DAIRY SCIENCE

Invited review: Mastitis in dairy heifers: Nature of the disease, potential impact, prevention, and control

(2012) S. De Vliegher et al.   JOURNAL OF DAIRY SCIENCE

Genome-Wide Bovine H3K27me3 Modifications and the Regulatory Effects on Genes Expressions in Peripheral Blood Lymphocytes

(2012) Yanghua He et al.   PLoS One

An atlas of DNA methylomes in porcine adipose and muscle tissues

(2012) Mingzhou Li et al.   Nature Communications

Development of multiplex polymerase chain reaction assay for rapid detection of Staphylococcus aureus and selected antibiotic resistance genes in bovine mastitic milk samples

(2011) Jian Gao et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

A novel DNA extraction and duplex polymerase chain reaction assay for the rapid detection of Prototheca zopfii genotype 2 in milk

(2011) J. Gao et al.   LETTERS IN APPLIED MICROBIOLOGY

Characterization of Prototheca zopfii Associated with Outbreak of Bovine Clinical Mastitis in Herd of Beijing, China

(2011) Jian Gao et al.   MYCOPATHOLOGIA

Genome-Wide Mapping of DNA Methylation in Chicken

(2011) Qinghe Li et al.   PLoS One

BISMA - Fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences

(2010) Christian Rohde et al.   BMC BIOINFORMATICS

Dynamic changes in the human methylome during differentiation

(2010) L. Laurent et al.   GENOME RESEARCH

Proteomics, Genomics, and Pathway Analyses ofEscherichia coliandStaphylococcus aureusInfected Milk Whey Reveal Molecular Pathways and Networks Involved in Mastitis

(2010) Eveline M. Ibeagha-Awemu et al.   JOURNAL OF PROTEOME RESEARCH

Comprehensive analysis of DNA-methylation in mammalian tissues using MeDIP-chip

(2010) Nina Pälmke et al.   METHODS

ErbB receptors and signaling pathways in cancer

(2009) Nancy E Hynes et al.   CURRENT OPINION IN CELL BIOLOGY

Genome-wide screen of promoter methylation identifies novel markers in melanoma

(2009) Y. Koga et al.   GENOME RESEARCH

Production loss due to new subclinical mastitis in Dutch dairy cows estimated with a test-day model

(2009) T. Halasa et al.   JOURNAL OF DAIRY SCIENCE

Erratum: Corrigendum: Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

(2009) Madeleine P Ball et al.   NATURE BIOTECHNOLOGY

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

(2009) Rafael A Irizarry et al.   NATURE GENETICS

Mastitis detection: current trends and future perspectives

(2009) Caroline Viguier et al.   TRENDS IN BIOTECHNOLOGY

Molecular Types and Genetic Profiles of Staphylococcus aureus Strains Isolated from Bovine Intramammary Infections and Extramammary Sites

(2008) M. Haveri et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Epigenetic Regulation of Gene Expression in the Inflammatory Response and Relevance to Common Diseases

(2008) Anthony G. Wilson   JOURNAL OF PERIODONTOLOGY

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

(2008) Peter A. C. 't Hoen et al.   NUCLEIC ACIDS RESEARCH

Epigenetic regulation of telomeres in human cancer

(2008) E Vera et al.   ONCOGENE