The skin microbiome of elasmobranchs follows phylosymbiosis, but in teleost fishes, the microbiomes converge

Viruses in the Built Environment (VIBE) meeting report

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The skin microbiome of vertebrates

(2019) Ashley A. Ross et al.   Microbiome

Environmental conditions and neutral processes shape the skin microbiome of European catfish ( Silurus glanis ) populations of Southwestern France

(2019) Marlène Chiarello et al.   Environmental Microbiology Reports

Elevated temperature drives kelp microbiome dysbiosis, while elevated carbon dioxide induces water microbiome disruption

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Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia

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The evolution of the host microbiome as an ecosystem on a leash

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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software

(2017) Alexander Sczyrba et al.   NATURE METHODS

Clustal Omega for making accurate alignments of many protein sequences

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The skin microbiome of the common thresher shark (Alopias vulpinus ) has low taxonomic and gene function β-diversity

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Unraveling the processes shaping mammalian gut microbiomes over evolutionary time

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Distinct biogeographical patterns of marine bacterial taxonomy and functional genes

(2016) John Matthew Haggerty et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History

(2016) Andrew W. Brooks et al.   PLOS BIOLOGY

SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data

(2015) Genivaldo Gueiros Z. Silva et al.   BIOINFORMATICS

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

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The Hologenome Concept: Helpful or Hollow?

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Comparison of the gut microbiomes of 12 bony fish and 3 shark species

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Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile

(2014) Charlie G. Buffie et al.   NATURE

Rapid changes in the gut microbiome during human evolution

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Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors

(2014) L. W. Kelly et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PhyloSift: phylogenetic analysis of genomes and metagenomes

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PEAR: a fast and accurate Illumina Paired-End reAd mergeR

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Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era

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Diversity of the skin microbiota of fishes: evidence for host species specificity

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The amphibian skin-associated microbiome across species, space and life history stages

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Structure and function of the human skin microbiome

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Comparative analysis of innate immune parameters of the skin mucous secretions from certain freshwater teleosts, inhabiting different ecological niches

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Basics of skin structure and function in elasmobranchs: a review

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Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

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Microbiome analysis among bats describes influences of host phylogeny, life history, physiology and geography

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A Format for Phylogenetic Placements

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Interactions Between the Microbiota and the Immune System

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RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

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Quality control and preprocessing of metagenomic datasets

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Bacterial community assembly based on functional genes rather than species

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Common Skate (Raja kenojei) Secretes Pentraxin into the Cutaneous Secretion: The First Skin Mucus Lectin in Cartilaginous Fish

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Myxinidin, A Novel Antimicrobial Peptide from the Epidermal Mucus of Hagfish, Myxine glutinosa L.

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