Multilocus species trees and species delimitation in a temporal context: application to the water shrews of the genus Neomys

THE EVOLUTIONARY HISTORY OF DARWIN'S FINCHES: SPECIATION, GENE FLOW, AND INTROGRESSION IN A FRAGMENTED LANDSCAPE

(2014) Heather L. Farrington et al.   EVOLUTION

Influence of gene flow on divergence dating - implications for the speciation history ofTakydromusgrass lizards

(2014) Shu-Ping Tseng et al.   MOLECULAR ECOLOGY

Genome Sequencing Highlights the Dynamic Early History of Dogs

(2014) Adam H. Freedman et al.   PLoS Genetics

Phylogeography and postglacial expansion of the endangered semi-aquatic mammal Galemys pyrenaicus

(2013) Javier Igea et al.   BMC EVOLUTIONARY BIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

How to fail at species delimitation

(2013) Bryan C. Carstens et al.   MOLECULAR ECOLOGY

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

The Influence of Gene Flow on Species Tree Estimation: A Simulation Study

(2013) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

SPECIES DELIMITATION WITH ABC AND OTHER COALESCENT-BASED METHODS: A TEST OF ACCURACY WITH SIMULATIONS AND AN EMPIRICAL EXAMPLE WITH LIZARDS OF THE LIOLAEMUS DARWINII COMPLEX (SQUAMATA: LIOLAEMIDAE)

(2012) Arley Camargo et al.   EVOLUTION

A multigene species tree for Western Mediterranean painted frogs (Discoglossus)

(2012) Maciej Pabijan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Revising the human mutation rate: implications for understanding human evolution

(2012) Aylwyn Scally et al.   NATURE REVIEWS GENETICS

Impact of Deep Coalescence on the Reliability of Species Tree Inference from Different Types of DNA Markers in Mammals

(2012) Alejandro Sánchez-Gracia et al.   PLoS One

Coalescent-based species delimitation in an integrative taxonomy

(2012) Matthew K. Fujita et al.   TRENDS IN ECOLOGY & EVOLUTION

POPULATION GENETICS AND OBJECTIVITY IN SPECIES DIAGNOSIS

(2011) Jody Hey et al.   EVOLUTION

Structurama: Bayesian Inference of Population Structure

(2011) John P. Huelsenbeck et al.   Evolutionary Bioinformatics

The performance of phylogenetic algorithms in estimating haplotype genealogies with migration

(2011) WALTER SALZBURGER et al.   MOLECULAR ECOLOGY

Bayesian inference of ancient human demography from individual genome sequences

(2011) Ilan Gronau et al.   NATURE GENETICS

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification

(2011) R. W. Meredith et al.   SCIENCE

Best Practices for Justifying Fossil Calibrations

(2011) James F. Parham et al.   SYSTEMATIC BIOLOGY

Evaluation of a Bayesian Coalescent Method of Species Delimitation

(2011) Chi Zhang et al.   SYSTEMATIC BIOLOGY

A Species Tree for the Australo-Papuan Fairy-wrens and Allies (Aves: Maluridae)

(2011) June Y. Lee et al.   SYSTEMATIC BIOLOGY

Effects of latitude and allopatry on body size variation in European water shrews

(2010) Boris Kryštufek et al.   ACTA THERIOLOGICA

Novel intron markers to study the phylogeny of closely related mammalian species

(2010) Javier Igea et al.   BMC EVOLUTIONARY BIOLOGY

CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS

(2010) John E. McCormack et al.   EVOLUTION

A multi-locus phylogeny of Nectogalini shrews and influences of the paleoclimate on speciation and evolution

(2010) Kai He et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic history of an archaic hominin group from Denisova Cave in Siberia

(2010) David Reich et al.   NATURE

Bayesian species delimitation using multilocus sequence data

(2010) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlates of substitution rate variation in mammalian protein-coding sequences

(2009) John J Welch et al.   BMC EVOLUTIONARY BIOLOGY

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

Multilocus phylogeography and phylogenetics using sequence-based markers

(2008) Patrícia H. Brito et al.   GENETICA

Differences in swimming and diving abilities between two sympatric species of water shrews: Neomys anomalus and Neomys fodiens (Soricidae)

(2008) Helena Mendes-Soares et al.   JOURNAL OF ETHOLOGY

Characterizing the Time Dependency of Human Mitochondrial DNA Mutation Rate Estimates

(2008) B. M. Henn et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION