Microbial Community Composition and Function in Sediments from the Pearl River Mouth Basin

Genome-resolved metagenomics analysis provides insights into the ecological role of Thaumarchaeota in the Amazon River and its plume

(2020) Otávio H. B. Pinto et al.   BMC MICROBIOLOGY

Metabolic relationships of uncultured bacteria associated with the microalgae Gambierdiscus

(2019) Ian M. Rambo et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic repertoire of the Woeseiaceae/JTB255, cosmopolitan and abundant core members of microbial communities in marine sediments

(2017) Marc Mußmann et al.   ISME Journal

Candidate Brocadiales dominates C, N and S cycling in anoxic groundwater of a pristine limestone-fracture aquifer

(2017) Robert Starke et al.   Journal of Proteomics

Nitric oxide is an obligate bacterial nitrification intermediate produced by hydroxylamine oxidoreductase

(2017) Jonathan D. Caranto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic diversity of marine anaerobic ammonium-oxidizing bacteria as revealed by genomic and proteomic analyses of ‘Candidatus Scalindua japonica’

(2017) Mamoru Oshiki et al.   Environmental Microbiology Reports

High occurrence of Bathyarchaeota (MCG) in the deep-sea sediments of South China Sea quantified using newly designed PCR primers

(2017) Tiantian Yu et al.   Environmental Microbiology Reports

Microbial Diversity and Community Structure of Sulfate-Reducing and Sulfur-Oxidizing Bacteria in Sediment Cores from the East China Sea

(2017) Yu Zhang et al.   Frontiers in Microbiology

Ecology and physiology of anaerobic ammonium oxidizing bacteria

(2016) Mamoru Oshiki et al.   ENVIRONMENTAL MICROBIOLOGY

Community composition and distribution of sulfate- and sulfite-reducing prokaryotes in sediments from the Changjiang estuary and adjacent East China Sea

(2015) Hui He et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Microbial diversity in the hydrate-containing and -free surface sediments in the Shenhu area, South China Sea

(2015) Lu Jiao et al.   Geoscience Frontiers

Distributions and assemblages of microbial communities along a sediment core retrieved from a potential hydrate-bearing region offshore southwestern Taiwan

(2014) Li-Hung Lin et al.   JOURNAL OF ASIAN EARTH SCIENCES

Bacterial and Archaeal Communities in Sediments of the North Chinese Marginal Seas

(2014) Jiwen Liu et al.   MICROBIAL ECOLOGY

Drivers shaping the diversity and biogeography of total and active bacterial communities in the South China Sea

(2014) Yao Zhang et al.   MOLECULAR ECOLOGY

Sulphur-oxidizing and sulphate-reducing communities in Brazilian mangrove sediments

(2013) Maryeimy Varon-Lopez et al.   ENVIRONMENTAL MICROBIOLOGY

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

(2013) Kenneth Wasmund et al.   ISME Journal

Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses

(2013) Jun Meng et al.   ISME Journal

Candidatus Methanogranum caenicola: a Novel Methanogen from the Anaerobic Digested Sludge, and Proposal of Methanomassiliicoccaceae fam. nov. and Methanomassiliicoccales ord. nov., for a Methanogenic Lineage of the Class Thermoplasmata

(2013) Takao Iino et al.   MICROBES AND ENVIRONMENTS

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

Molecular Detection of Candidatus Scalindua pacifica and Environmental Responses of Sediment Anammox Bacterial Community in the Bohai Sea, China

(2013) Hongyue Dang et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen

(2013) Morten Poulsen et al.   Nature Communications

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

(2013) Laura A Hug et al.   Microbiome

The metagenome of the marine anammox bacterium ‘CandidatusScalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium

(2012) Jack van de Vossenberg et al.   ENVIRONMENTAL MICROBIOLOGY

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

(2012) Kyoko Kubo et al.   ISME Journal

Microbial Diversity in Deep-sea Methane Seep Sediments Presented by SSU rRNA Gene Tag Sequencing

(2012) Takuro Nunoura et al.   MICROBES AND ENVIRONMENTS

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Small Changes in pH Have Direct Effects on Marine Bacterial Community Composition: A Microcosm Approach

(2012) Evamaria Krause et al.   PLoS One

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantification of microbial communities in subsurface marine sediments of the Black Sea and off Namibia

(2012) Axel Schippers   Frontiers in Microbiology

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Microbial diversity in cold seep sediments from the northern South China Sea

(2011) Yong Zhang et al.   Geoscience Frontiers

Novel groups of Gammaproteobacteria catalyse sulfur oxidation and carbon fixation in a coastal, intertidal sediment

(2010) Sabine Lenk et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of Archaeal Community in Contaminated and Uncontaminated Surface Stream Sediments

(2010) Iris Porat et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Vertical distribution and diversity of sulfate-reducing prokaryotes in the Pearl River estuarine sediments, Southern China

(2009) Lijing Jiang et al.   FEMS MICROBIOLOGY ECOLOGY

A microdiversity study of anammox bacteria reveals a novelCandidatusScalindua phylotype in marine oxygen minimum zones

(2008) Dagmar Woebken et al.   ENVIRONMENTAL MICROBIOLOGY

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

(2008) Céline Brochier-Armanet et al.   NATURE REVIEWS MICROBIOLOGY