Genetic diversity of marine anaerobic ammonium-oxidizing bacteria as revealed by genomic and proteomic analyses of ‘Candidatus Scalindua japonica’

Draft Genome of Scalindua rubra, Obtained from the Interface Above the Discovery Deep Brine in the Red Sea, Sheds Light on Potential Salt Adaptation Strategies in Anammox Bacteria

(2017) Daan R. Speth et al.   MICROBIAL ECOLOGY

Widespread distribution of encapsulin nanocompartments reveals functional diversity

(2017) Tobias W. Giessen et al.   Nature Microbiology

Ecology and physiology of anaerobic ammonium oxidizing bacteria

(2016) Mamoru Oshiki et al.   ENVIRONMENTAL MICROBIOLOGY

Hydroxylamine-dependent anaerobic ammonium oxidation (anammox) by “Candidatus Brocadia sinica”

(2016) Mamoru Oshiki et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of Anammox Hydrazine Dehydrogenase, a Key N2-producing Enzyme in the Global Nitrogen Cycle

(2016) Wouter J. Maalcke et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Diversity, Community Composition and Abundance of Anammox Bacteria in Sediments of the North Marginal Seas of China

(2016) Ahmed Shehzad et al.   MICROBES AND ENVIRONMENTS

Anammox Biochemistry: a Tale of Heme c Proteins

(2016) Boran Kartal et al.   TRENDS IN BIOCHEMICAL SCIENCES

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Physiological characterization of anaerobic ammonium oxidizing bacterium ‘Candidatus Jettenia caeni’

(2014) Muhammad Ali et al.   ENVIRONMENTAL MICROBIOLOGY

Biogeography of anaerobic ammonia-oxidizing (anammox) bacteria

(2014) Puntipar Sonthiphand et al.   Frontiers in Microbiology

Physiological Characterization of an Anaerobic Ammonium-Oxidizing Bacterium Belonging to the “Candidatus Scalindua” Group

(2013) Takanori Awata et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular Detection of Candidatus Scalindua pacifica and Environmental Responses of Sediment Anammox Bacterial Community in the Bohai Sea, China

(2013) Hongyue Dang et al.   PLoS One

The metagenome of the marine anammox bacterium ‘CandidatusScalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium

(2012) Jack van de Vossenberg et al.   ENVIRONMENTAL MICROBIOLOGY

Genome-wide analytical approaches using semi-quantitative expression proteomics for aromatic hydrocarbon metabolism in Pseudomonas putida F1

(2012) Yasuhiro Kasahara et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Structure-Function Relationships of the G Domain, a Canonical Switch Motif

(2011) Alfred Wittinghofer et al.   Annual Review of Biochemistry

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular mechanism of anaerobic ammonium oxidation

(2011) Boran Kartal et al.   NATURE

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

The Initiation of GTP Hydrolysis by the G-Domain of FeoB: Insights from a Transition-State Complex Structure

(2011) Miriam-Rose Ash et al.   PLoS One

NirF is a periplasmic protein that binds d1 heme as part of its essential role in d1 heme biogenesis

(2010) Shilpa Bali et al.   FEBS Journal

Enrichment Using an Up-flow Column Reactor and Community Structure of Marine Anammox Bacteria from Coastal Sediment

(2010) Tomonori Kindaichi et al.   MICROBES AND ENVIRONMENTS

emPAI Calc—for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry

(2009) Kosaku Shinoda et al.   BIOINFORMATICS

Citrate-mediated iron uptake in Pseudomonas aeruginosa: involvement of the citrate-inducible FecA receptor and the FeoB ferrous iron transporter

(2009) B. Marshall et al.   MICROBIOLOGY-SGM

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Basis of Novel Interactions Between the Small-GTPase and GDI-like Domains in Prokaryotic FeoB Iron Transporter

(2009) Motoyuki Hattori et al.   STRUCTURE

MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes

(2008) H. Noguchi et al.   DNA RESEARCH

Evolution of an octahaem cytochromecprotein family that is key to aerobic and anaerobic ammonia oxidation by bacteria

(2008) Martin G. Klotz et al.   ENVIRONMENTAL MICROBIOLOGY

Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production

(2008) Jack van de Vossenberg et al.   ENVIRONMENTAL MICROBIOLOGY

A microdiversity study of anammox bacteria reveals a novelCandidatusScalindua phylotype in marine oxygen minimum zones

(2008) Dagmar Woebken et al.   ENVIRONMENTAL MICROBIOLOGY

An Alternative Menaquinone Biosynthetic Pathway Operating in Microorganisms

(2008) T. Hiratsuka et al.   SCIENCE

Characterization of a Novel Prokaryotic GDP Dissociation Inhibitor Domain from the G Protein Coupled Membrane Protein FeoB

(2007) Edward T. Eng et al.   JOURNAL OF MOLECULAR BIOLOGY