Impact of RNase E and RNase J on Global mRNA Metabolism in the Cyanobacterium Synechocystis PCC6803

Hydrogen Peroxide Participates in Perception and Transduction of Cold Stress Signal in Synechocystis

(2018) Pavel V Fedurayev et al.   PLANT AND CELL PHYSIOLOGY

Tracking the elusive 5′ exonuclease activity of Chlamydomonas reinhardtii RNase J

(2018) Anna Liponska et al.   PLANT MOLECULAR BIOLOGY

The host-encoded RNase E endonuclease as the crRNA maturation enzyme in a CRISPR–Cas subtype III-Bv system

(2018) Juliane Behler et al.   Nature Microbiology

Ethanol, glycogen and glucosylglycerol represent competing carbon pools in ethanol-producing cells of Synechocystis sp. PCC 6803 under high-salt conditions

(2017) Nadin Pade et al.   MICROBIOLOGY-SGM

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

(2017) Yanjie Chao et al.   MOLECULAR CELL

Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803

(2017) Joaquín Giner-Lamia et al.   NUCLEIC ACIDS RESEARCH

Regulation of mRNA Decay in Bacteria

(2016) Bijoy K. Mohanty et al.   Annual Review of Microbiology

The ploidy level of Synechocystis sp. PCC 6803 is highly variable and is influenced by growth phase and by chemical and physical external parameters

(2016) Karolin Zerulla et al.   MICROBIOLOGY-SGM

RNase J depletion leads to massive changes in mRNA abundance inHelicobacter pylori

(2016) Yulia Redko et al.   RNA Biology

Nonhierarchical Flux Regulation Exposes the Fitness Burden Associated with Lactate Production in Synechocystis sp. PCC6803

(2016) Wei Du et al.   ACS Synthetic Biology

Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

(2015) Orawan Borirak et al.   Biotechnology for Biofuels

RNA degradosomes in bacteria and chloroplasts: classification, distribution and evolution of RNase E homologs

(2015) Soraya Aït-Bara et al.   MOLECULAR MICROBIOLOGY

Membrane Recognition and Dynamics of the RNA Degradosome

(2015) Henrik Strahl et al.   PLoS Genetics

Decay-Initiating Endoribonucleolytic Cleavage by RNase Y Is Kept under Tight Control via Sequence Preference and Sub-cellular Localisation

(2015) Vanessa Khemici et al.   PLoS Genetics

Comparative Analysis of the Primary Transcriptome of Synechocystis sp. PCC 6803

(2014) Matthias Kopf et al.   DNA RESEARCH

Nitrite Transport Activity of a Novel HPP Family Protein Conserved in Cyanobacteria and Chloroplasts

(2014) Shin-ichi Maeda et al.   PLANT AND CELL PHYSIOLOGY

The hypothetical protein Ycf46 is involved in regulation of CO2 utilization in the cyanobacterium Synechocystis sp. PCC 6803

(2014) Hai-Bo Jiang et al.   PLANTA

RNase E forms a complex with polynucleotide phosphorylase in cyanobacteria via a cyanobacterial-specific nonapeptide in the noncatalytic region

(2014) J.-Y. Zhang et al.   RNA

Initiation of mRNA decay in bacteria

(2013) Soumaya Laalami et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Toxin-Antitoxin Systems on the Large Defense Plasmid pSYSA ofSynechocystissp. PCC 6803

(2013) Stefan Kopfmann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bacillus subtilis RNase Y Activity In Vivo Analysed by Tiling Microarrays

(2013) Soumaya Laalami et al.   PLoS One

CRISPR-Cas Systems in the Cyanobacterium Synechocystis sp. PCC6803 Exhibit Distinct Processing Pathways Involving at Least Two Cas6 and a Cmr2 Protein

(2013) Ingeborg Scholz et al.   PLoS One

Engineering a Cyanobacterial Cell Factory for Production of Lactic Acid

(2012) S. Andreas Angermayr et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RNA-seq based identification and mutant validation of gene targets related to ethanol resistance in cyanobacterial Synechocystis sp. PCC 6803

(2012) Jiangxin Wang et al.   Biotechnology for Biofuels

RNase E: at the interface of bacterial RNA processing and decay

(2012) George A. Mackie   NATURE REVIEWS MICROBIOLOGY

Membrane binding of Escherichia coli RNase E catalytic domain stabilizes protein structure and increases RNA substrate affinity

(2012) O. N. Murashko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three Essential Ribonucleases—RNase Y, J1, and III—Control the Abundance of a Majority of Bacillus subtilis mRNAs

(2012) Sylvain Durand et al.   PLoS Genetics

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA

(2011) R. E. Sharwood et al.   RNA

Chloroplast RNA Metabolism

(2010) David B. Stern et al.   Annual Review of Plant Biology

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

(2010) Nancy Y. Yu et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis

(2009) Karen Shahbabian et al.   EMBO JOURNAL

Maturation of 23S rRNA in Bacillus subtilis in the Absence of Mini-III

(2009) Y. Redko et al.   JOURNAL OF BACTERIOLOGY

RNase E autoregulates its synthesis inEscherichia coliby binding directly to a stem-loop in therne5′ untranslated region

(2009) Alyssa Schuck et al.   MOLECULAR MICROBIOLOGY

Bacillus subtilisribonucleases J1 and J2 form a complex with altered enzyme behaviour

(2009) Nathalie Mathy et al.   MOLECULAR MICROBIOLOGY

Evidence for a major role of antisense RNAs in cyanobacterial gene regulation

(2009) Jens Georg et al.   Molecular Systems Biology

Global Transcriptional Response of the Alkali-Tolerant Cyanobacterium Synechocystis sp. Strain PCC 6803 to a pH 10 Environment

(2008) T. C. Summerfield et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale

(2008) Ulrike Mäder et al.   MOLECULAR MICROBIOLOGY

Structural insights into the dual activity of RNase J

(2008) Inés Li de la Sierra-Gallay et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme

(2008) A. Schein et al.   RNA