Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803

Awakening of a Dormant Cyanobacterium from Nitrogen Chlorosis Reveals a Genetically Determined Program

(2016) Alexander Klotz et al.   CURRENT BIOLOGY

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

(2015) Guangchuang Yu et al.   BIOINFORMATICS

The sRNA NsiR4 is involved in nitrogen assimilation control in cyanobacteria by targeting glutamine synthetase inactivating factor IF7

(2015) Stephan Klähn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An assessment of bacterial small RNA target prediction programs

(2015) Adrien Pain et al.   RNA Biology

Comparative Analysis of the Primary Transcriptome of Synechocystis sp. PCC 6803

(2014) Matthias Kopf et al.   DNA RESEARCH

SPR analysis of promoter binding ofSynechocystisPCC6803 transcription factors NtcA and CRP suggests cross-talk and sheds light on regulation by effector molecules

(2014) Alicia Forcada-Nadal et al.   FEBS LETTERS

Synergy: A Web Resource for Exploring Gene Regulation in Synechocystis sp. PCC6803

(2014) Niklas Mähler et al.   PLoS One

Rre37 stimulates accumulation of 2-oxoglutarate and glycogen under nitrogen starvation inSynechocystissp. PCC 6803

(2013) Ancy Joseph et al.   FEBS LETTERS

Comparative genomics boosts target prediction for bacterial small RNAs

(2013) P. R. Wright et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum

(2012) B. Jungwirth et al.   MICROBIOLOGY-SGM

ChIP-seq and transcriptome analysis of the OmpR regulon ofSalmonella entericaserovars Typhi and Typhimurium reveals accessory genes implicated in host colonization

(2012) Timothy T. Perkins et al.   MOLECULAR MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Time-series resolution of gradual nitrogen starvation and its impact on photosynthesis in the cyanobacterium Synechocystis PCC 6803

(2012) Vladimir Krasikov et al.   PHYSIOLOGIA PLANTARUM

Roadblock Repression of Transcription by Bacillus subtilis CodY

(2011) Boris R. Belitsky et al.   JOURNAL OF MOLECULAR BIOLOGY

A Response Regulator Rre37 and an RNA Polymerase Sigma Factor SigE Represent Two Parallel Pathways to Activate Sugar Catabolism in a Cyanobacterium Synechocystis sp. PCC 6803

(2011) Miyuki Azuma et al.   PLANT AND CELL PHYSIOLOGY

Dynamics of transcriptional start site selection during nitrogen stress-induced cell differentiation in Anabaena sp. PCC7120

(2011) J. Mitschke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An experimentally anchored map of transcriptional start sites in the model cyanobacteriumSynechocystissp. PCC6803

(2011) Jan Mitschke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Requirement of the Nitrogen Starvation-Induced Protein Sll0783 for Polyhydroxybutyrate Accumulation in Synechocystis sp. Strain PCC 6803

(2010) M. Schlebusch et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cyanobacterial NDH-1 complexes: Novel insights and remaining puzzles

(2010) Natalia Battchikova et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Specific Role of the Cyanobacterial PipX Factor in the Heterocysts of Anabaena sp. Strain PCC 7120

(2010) A. Valladares et al.   JOURNAL OF BACTERIOLOGY

Dynamic Changes in the Proteome ofSynechocystis6803 in Response to CO2Limitation Revealed by Quantitative Proteomics

(2010) Natalia Battchikova et al.   JOURNAL OF PROTEOME RESEARCH

Microbial metalloproteomes are largely uncharacterized

(2010) Aleksandar Cvetkovic et al.   NATURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Compartmentalized function through cell differentiation in filamentous cyanobacteria

(2009) Enrique Flores et al.   NATURE REVIEWS MICROBIOLOGY

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

(2008) Anke Busch et al.   BIOINFORMATICS

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions

(2008) Tomohiro Shimada et al.   NUCLEIC ACIDS RESEARCH