Porcine reproductive and respiratory syndrome virus dissemination across pig production systems in the United States

Agricultural and geographic factors shaped the North American 2015 highly pathogenic avian influenza H5N2 outbreak

(2020) Joseph T. Hicks et al.   PLoS Pathogens

Dynamic contact networks of swine movement in Manitoba, Canada: Characterization and implications for infectious disease spread

(2019) Carolyn Augusta et al.   Transboundary and Emerging Diseases

Bayesian estimation of past population dynamics in BEAST 1.10 using the Skygrid coalescent model

(2019) Verity Hill et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeography, phylodynamics and the recent outbreak of lineage 3 porcine reproductive and respiratory syndrome viruses in China

(2019) Yan-Kuo Sun et al.   Transboundary and Emerging Diseases

Estimation of swine movement network at farm level in the US from the Census of Agriculture data

(2019) Sifat A. Moon et al.   Scientific Reports

The evolution and phylodynamics of serotype A and SAT2 foot-and-mouth disease viruses in endemic regions of Africa

(2019) S. Lycett et al.   Scientific Reports

Using phylogeographic approaches to analyse the dispersal history, velocity and direction of viral lineages — Application to rabies virus spread in Iran

(2019) Simon Dellicour et al.   MOLECULAR ECOLOGY

Aerosol Detection and Transmission of Porcine Reproductive and Respiratory Syndrome Virus (PRRSV): What Is the Evidence, and What Are the Knowledge Gaps?

(2019) Andréia Gonçalves Arruda et al.   Viruses-Basel

Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration

(2019) Jing Yang et al.   PLoS Computational Biology

Machine-learning algorithms to identify key biosecurity practices and factors associated with breeding herds reporting PRRS outbreak

(2019) Gustavo S. Silva et al.   PREVENTIVE VETERINARY MEDICINE

Effective biosecurity to protect North American studs and clients from emerging infectious disease

(2019) Darwin L. Reicks   THERIOGENOLOGY

Phylogeographic Analysis and Identification of Factors Impacting the Diffusion of Foot-and-Mouth Disease Virus in Africa

(2019) Florian Duchatel et al.   Frontiers in Ecology and Evolution

Does urban vegetation reduce temperature and air pollution concentrations? Findings from an environmental monitoring study of the Central Experimental Farm in Ottawa, Canada

(2019) Keith Van Ryswyk et al.   ATMOSPHERIC ENVIRONMENT

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa

(2019) Nuno R. Faria et al.   PLoS Pathogens

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Surveillance of porcine reproductive and respiratory syndrome virus in the United States using risk mapping and species distribution modeling

(2018) Moh A. Alkhamis et al.   PREVENTIVE VETERINARY MEDICINE

Assessment of area spread of porcine reproductive and respiratory syndrome (PRRS) virus in three clusters of swine farms

(2018) A. G. Arruda et al.   Transboundary and Emerging Diseases

Effect of vaccination with a porcine reproductive and respiratory syndrome subunit vaccine on sow reproductive performance in endemic farms

(2018) Jiwoon Jeong et al.   VETERINARY RECORD

Genetic diversity of PRRSV 1 in Central Eastern Europe in 1994–2014: origin and evolution of the virus in the region

(2018) Gyula Balka et al.   Scientific Reports

Recent advances in computational phylodynamics

(2018) Guy Baele et al.   Current Opinion in Virology

Controlling bovine paratuberculosis at a regional scale: Towards a decision modelling tool

(2017) Gaël Beaunée et al.   JOURNAL OF THEORETICAL BIOLOGY

The Structured Coalescent and Its Approximations

(2017) Nicola F. Müller et al.   MOLECULAR BIOLOGY AND EVOLUTION

Virus genomes reveal factors that spread and sustained the Ebola epidemic

(2017) Gytis Dudas et al.   NATURE

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Bluetongue virus spread in Europe is a consequence of climatic, landscape and vertebrate host factors as revealed by phylogeographic inference

(2017) Maude Jacquot et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Land altitude, slope, and coverage as risk factors for Porcine Reproductive and Respiratory Syndrome (PRRS) outbreaks in the United States

(2017) Andréia Gonçalves Arruda et al.   PLoS One

Novel approaches for Spatial and Molecular Surveillance of Porcine Reproductive and Respiratory Syndrome Virus (PRRSv) in the United States

(2017) Moh A. Alkhamis et al.   Scientific Reports

SERAPHIM: studying environmental rasters and phylogenetically informed movements

(2016) Simon Dellicour et al.   BIOINFORMATICS

Explaining the geographic spread of emerging epidemics: a framework for comparing viral phylogenies and environmental landscape data

(2016) Simon Dellicour et al.   BMC BIOINFORMATICS

A global classification of vegetation based on NDVI, rainfall and temperature

(2016) Xianliang Zhang et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes

(2016) Filip Bielejec et al.   MOLECULAR BIOLOGY AND EVOLUTION

Spatio-temporal analysis of Nova virus, a divergent hantavirus circulating in the European mole in Belgium

(2016) Lies Laenen et al.   MOLECULAR ECOLOGY

Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates

(2016) Mandev S. Gill et al.   SYSTEMATIC BIOLOGY

Applications of Bayesian Phylodynamic Methods in a Recent U.S. Porcine Reproductive and Respiratory Syndrome Virus Outbreak

(2016) Mohammad A. Alkhamis et al.   Frontiers in Microbiology

Phylodynamic analysis of porcine reproductive and respiratory syndrome virus (PRRSV) in Italy: Action of selective pressures and interactions between different clades

(2015) Giovanni Franzo et al.   INFECTION GENETICS AND EVOLUTION

Lessons learned and knowledge gaps about the epidemiology and control of porcine reproductive and respiratory syndrome virus in North America

(2015) Andres M. Perez et al.   JAVMA-JOURNAL OF THE AMERICAN VETERINARY MEDICAL ASSOCIATION

Fast Dating Using Least-Squares Criteria and Algorithms

(2015) Thu-Hien To et al.   SYSTEMATIC BIOLOGY

The effect of genetic structure on molecular dating and tests for temporal signal

(2015) Gemma G. R. Murray et al.   Methods in Ecology and Evolution

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparison of time to PRRSv-stability and production losses between two exposure programs to control PRRSv in sow herds

(2014) D.C.L. Linhares et al.   PREVENTIVE VETERINARY MEDICINE

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Risk factors for the transmission of foot-and-mouth disease during the 2010 outbreak in Japan: a case--control study

(2013) Norihiko Muroga et al.   BMC Veterinary Research

Epidemiological study of air filtration systems for preventing PRRSV infection in large sow herds

(2013) Carmen Alonso et al.   PREVENTIVE VETERINARY MEDICINE

Viral Phylodynamics

(2013) Erik M. Volz et al.   PLoS Computational Biology

Risk of African swine fever introduction into the European Union through transport-associated routes: returning trucks and waste from international ships and planes

(2012) Lina Mur et al.   BMC Veterinary Research

Risk factors for porcine reproductive and respiratory syndrome virus infection and resulting challenges for effective disease surveillance

(2012) Martina Velasova et al.   BMC Veterinary Research

Unifying the spatial epidemiology and molecular evolution of emerging epidemics

(2012) O. G. Pybus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An evaluation of interventions for reducing the risk of PRRSV introduction to filtered farms via retrograde air movement through idle fans

(2012) Carmen Alonso et al.   VETERINARY MICROBIOLOGY

Animal Migration and Infectious Disease Risk

(2011) S. Altizer et al.   SCIENCE

Combining contemporary and ancient DNA in population genetic and phylogeographical studies

(2010) MIGUEL NAVASCUÉS et al.   Molecular Ecology Resources

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Long-distance airborne transport of infectious PRRSV and Mycoplasma hyopneumoniae from a swine population infected with multiple viral variants

(2010) Satoshi Otake et al.   VETERINARY MICROBIOLOGY

The structural biology of PRRSV

(2010) Terje Dokland   VIRUS RESEARCH

Control and elimination of porcine reproductive and respiratory syndrome virus

(2010) Cesar A. Corzo et al.   VIRUS RESEARCH

Molecular epidemiology of PRRSV: A phylogenetic perspective

(2010) Mang Shi et al.   VIRUS RESEARCH

Evolutionary analysis of the dynamics of viral infectious disease

(2009) Oliver G. Pybus et al.   NATURE REVIEWS GENETICS

Evidence of long distance airborne transport of porcine reproductive and respiratory syndrome virus andMycoplasma hyopneumoniae

(2009) Scott Dee et al.   VETERINARY RESEARCH

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

Serological Survey for Foot-and-Mouth Disease Virus in Wildlife in Eastern Africa and Estimation of Test Parameters of a Nonstructural Protein Enzyme-Linked Immunosorbent Assay for Buffalo

(2008) B. M. D. C. Bronsvoort et al.   Clinical and Vaccine Immunology

Vegetative buffers for fan emissions from poultry farms: 1. temperature and foliar nitrogen

(2008) P. H. Patterson et al.   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART B-PESTICIDES FOOD CONTAMINANTS AND AGRICULTURAL WASTES

Use of a production region model to assess the airborne spread of porcine reproductive and respiratory syndrome virus

(2008) Andrea Pitkin et al.   VETERINARY MICROBIOLOGY