Changes in taxonomic and phylogenetic diversity in the Anthropocene

A Critique of the Space-for-Time Substitution Practice in Community Ecology

(2019) Christian Damgaard   TRENDS IN ECOLOGY & EVOLUTION

For common community phylogenetic analyses, go ahead and use synthesis phylogenies

(2019) Daijiang Li et al.   ECOLOGY

Is local biodiversity declining or not? A summary of the debate over analysis of species richness time trends

(2018) Bradley J. Cardinale et al.   BIOLOGICAL CONSERVATION

Biodiversity gains? The debate on changes in local- vs global-scale species richness

(2018) Richard B. Primack et al.   BIOLOGICAL CONSERVATION

The Homogocene: a research prospectus for the study of biotic homogenisation

(2018) Julian D. Olden et al.   NeoBiota

BioTIME: A database of biodiversity time series for the Anthropocene

(2018) Maria Dornelas et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Biodiversity change is uncoupled from species richness trends: Consequences for conservation and monitoring

(2017) Helmut Hillebrand et al.   JOURNAL OF APPLIED ECOLOGY

lmerTest Package: Tests in Linear Mixed Effects Models

(2017) Alexandra Kuznetsova et al.   Journal of Statistical Software

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

An integrated assessment of the vascular plant species of the Americas

(2017) Carmen Ulloa Ulloa et al.   SCIENCE

A global database on freshwater fish species occurrence in drainage basins

(2017) Pablo A. Tedesco et al.   Scientific Data

A guide to phylogenetic metrics for conservation, community ecology and macroecology

(2016) Caroline M. Tucker et al.   BIOLOGICAL REVIEWS

Phylogenetic community structure metrics and null models: a review with new methods and software

(2016) Eliot T. Miller et al.   ECOGRAPHY

Estimating local biodiversity change: a critique of papers claiming no net loss of local diversity

(2016) Andrew Gonzalez et al.   ECOLOGY

Contrasting changes in the abundance and diversity of North American bird assemblages from 1971 to 2010

(2016) Aafke M. Schipper et al.   GLOBAL CHANGE BIOLOGY

Biotic homogenization can decrease landscape-scale forest multifunctionality

(2016) Fons van der Plas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project

(2016) Lawrence N. Hudson et al.   Ecology and Evolution

Global change and local solutions: Tapping the unrealized potential of citizen science for biodiversity research

(2015) E.J. Theobald et al.   BIOLOGICAL CONSERVATION

Interacting effects of change in climate, human population, land use, and water use on biodiversity and ecosystem services

(2015) Bodil Elmhagen et al.   ECOLOGY AND SOCIETY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Global effects of land use on local terrestrial biodiversity

(2015) Tim Newbold et al.   NATURE

High-Throughput Sequencing—The Key to Rapid Biodiversity Assessment of Marine Metazoa?

(2015) Inga Mohrbeck et al.   PLoS One

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

(2015) Cody E. Hinchliff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Landscape simplification filters species traits and drives biotic homogenization

(2015) Sagrario Gámez-Virués et al.   Nature Communications

Rapid biotic homogenization of marine fish assemblages

(2015) Anne E. Magurran et al.   Nature Communications

Accelerated modern human-induced species losses: Entering the sixth mass extinction

(2015) G. Ceballos et al.   Science Advances

Assemblage Time Series Reveal Biodiversity Change but Not Systematic Loss

(2014) M. Dornelas et al.   SCIENCE

The taxonomic name resolution service: an online tool for automated standardization of plant names

(2013) Brad Boyle et al.   BMC BIOINFORMATICS

Three keys to the radiation of angiosperms into freezing environments

(2013) Amy E. Zanne et al.   NATURE

Global meta-analysis reveals no net change in local-scale plant biodiversity over time

(2013) M. Vellend et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecophylogenetics: advances and perspectives

(2012) Nicolas Mouquet et al.   BIOLOGICAL REVIEWS

Phylogenetic diversity and the functioning of ecosystems

(2012) Diane S. Srivastava et al.   ECOLOGY LETTERS

The relationship between species replacement, dissimilarity derived from nestedness, and nestedness

(2012) Andrés Baselga   GLOBAL ECOLOGY AND BIOGEOGRAPHY

The global diversity of birds in space and time

(2012) W. Jetz et al.   NATURE

Pattern and process of biotic homogenization in the New Pangaea

(2012) B. Baiser et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

betapart: an R package for the study of beta diversity

(2012) Andrés Baselga et al.   Methods in Ecology and Evolution

On the meta-analysis of response ratios for studies with correlated and multi-group designs

(2011) Marc J. Lajeunesse   ECOLOGY

Consequences of climate change on the tree of life in Europe

(2011) Wilfried Thuiller et al.   NATURE

Has the Earth’s sixth mass extinction already arrived?

(2011) Anthony D. Barnosky et al.   NATURE

Homogenization patterns of the world's freshwater fish faunas

(2011) S. Villeger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic Metrics of Community Similarity

(2010) Anthony R. Ives et al.   AMERICAN NATURALIST

Biodiversity and Climate Change: Integrating Evolutionary and Ecological Responses of Species and Communities

(2010) Sébastien Lavergne et al.   Annual Review of Ecology Evolution and Systematics

VertNet: Creating a Data-sharing Community

(2010) Robert Guralnick et al.   BIOSCIENCE

The merging of community ecology and phylogenetic biology

(2009) Jeannine Cavender-Bares et al.   ECOLOGY LETTERS

Phylogenetic Resolution and Quantifying the Phylogenetic Diversity and Dispersion of Communities

(2009) Nathan G. Swenson   PLoS One

Plant extinctions and introductions lead to phylogenetic and taxonomic homogenization of the European flora

(2009) M. Winter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylocom: software for the analysis of phylogenetic community structure and trait evolution

(2008) Campbell O. Webb et al.   BIOINFORMATICS

Threatened Species and the Potential Loss of Phylogenetic Diversity: Conservation Scenarios Based on Estimated Extinction Probabilities and Phylogenetic Risk Analysis

(2008) DANIEL P. FAITH   CONSERVATION BIOLOGY

Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

(2008) J. A. Bryant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA