Shared up-regulation and contrasting down-regulation of gene expression distinguish desiccation-tolerant from intolerant green algae
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Shared up-regulation and contrasting down-regulation of gene expression distinguish desiccation-tolerant from intolerant green algae
Authors
Keywords
-
Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume -, Issue -, Pages 201906904
Publisher
Proceedings of the National Academy of Sciences
Online
2020-07-08
DOI
10.1073/pnas.1906904117
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Comparing control options for time‐series RNA sequencing experiments in nonmodel organisms: An example from grasses
- (2020) Fan Qiu et al. Molecular Ecology Resources
- A model suite of green algae within the Scenedesmaceae for investigating contrasting desiccation tolerance and morphology
- (2018) Zoe G. Cardon et al. JOURNAL OF CELL SCIENCE
- Analysis of pcC13-62 promoters predicts a link between cis-element variations and desiccation tolerance in Linderniaceae
- (2018) Valentino Giarola et al. JOURNAL OF EXPERIMENTAL BOTANY
- Genome Analysis of the Ancient Tracheophyte Selaginella tamariscina Reveals Evolutionary Features Relevant to the Acquisition of Desiccation Tolerance
- (2018) Zhichao Xu et al. Molecular Plant
- Desiccation tolerance evolved through gene duplication and network rewiring in Lindernia
- (2018) Robert VanBuren et al. PLANT CELL
- Enhanced Desiccation Tolerance in Mature Cultures of the Streptophytic Green Alga Zygnema circumcarinatum Revealed by Transcriptomics
- (2017) Martin Rippin et al. PLANT AND CELL PHYSIOLOGY
- Seed desiccation mechanisms co-opted for vegetative desiccation in the resurrection grass Oropetium thomaeum
- (2017) Robert VanBuren et al. PLANT CELL AND ENVIRONMENT
- Angiosperm Plant Desiccation Tolerance: Hints from Transcriptomics and Genome Sequencing
- (2017) Valentino Giarola et al. TRENDS IN PLANT SCIENCE
- iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
- (2016) Yi Zheng et al. Molecular Plant
- UniProt: the universal protein knowledgebase
- (2016) NUCLEIC ACIDS RESEARCH
- Thylakoid Membrane Architecture in Synechocystis Depends on CurT, a Homolog of the Granal CURVATURE THYLAKOID1 Proteins
- (2016) Steffen Heinz et al. PLANT CELL
- GOplot: an R package for visually combining expression data with functional analysis: Fig. 1.
- (2015) Wencke Walter et al. BIOINFORMATICS
- GenBank
- (2015) Karen Clark et al. NUCLEIC ACIDS RESEARCH
- The application of RNA-seq to the comprehensive analysis of plant mitochondrial transcriptomes
- (2014) James D. Stone et al. MOLECULAR GENETICS AND GENOMICS
- Systems-Wide Analysis of Acclimation Responses to Long-Term Heat Stress and Recovery in the Photosynthetic Model OrganismChlamydomonas reinhardtii
- (2014) Dorothea Hemme et al. PLANT CELL
- Transcriptomics of Desiccation Tolerance in the Streptophyte Green Alga Klebsormidium Reveal a Land Plant-Like Defense Reaction
- (2014) Andreas Holzinger et al. PLoS One
- Compartmentalization of the protein repair machinery in photosynthetic membranes
- (2014) S. Puthiyaveetil et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The evolution of desiccation tolerance in angiosperm plants: a rare yet common phenomenon
- (2013) Donald F. Gaff et al. FUNCTIONAL PLANT BIOLOGY
- Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust
- (2013) Lara Rajeev et al. ISME Journal
- Group 1 LEA proteins, an ancestral plant protein group, are also present in other eukaryotes, and in the archeae and bacteria domains
- (2013) F. Campos et al. MOLECULAR GENETICS AND GENOMICS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Arabidopsis CURVATURE THYLAKOID1 Proteins Modify Thylakoid Architecture by Inducing Membrane Curvature
- (2013) U. Armbruster et al. PLANT CELL
- Molecular mechanisms of desiccation tolerance in the resurrection glacial relic Haberlea rhodopensis
- (2012) Tsanko S. Gechev et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Programming desiccation-tolerance: from plants to seeds to resurrection plants
- (2011) Jill M Farrant et al. CURRENT OPINION IN PLANT BIOLOGY
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
- (2011) S. Powell et al. NUCLEIC ACIDS RESEARCH
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- Transcriptomes of the desiccation-tolerant resurrection plant Craterostigma plantagineum
- (2010) Maria C. Suarez Rodriguez et al. PLANT JOURNAL
- Gene ontology analysis for RNA-seq: accounting for selection bias
- (2010) Matthew D Young et al. GENOME BIOLOGY
- Towards a systems-based understanding of plant desiccation tolerance
- (2009) John P. Moore et al. TRENDS IN PLANT SCIENCE
- The Green Algal Underground: Evolutionary Secrets of Desert Cells
- (2008) Zoe G. Cardon et al. BIOSCIENCE
- InterPro: the integrative protein signature database
- (2008) S. Hunter et al. NUCLEIC ACIDS RESEARCH
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now