Homoeologous exchanges occur through intragenic recombination generating novel transcripts and proteins in wheat and other polyploids

DNA methylation repatterning accompanying hybridization, whole genome doubling and homoeolog exchange in nascent segmental rice allotetraploids

(2019) Ning Li et al.   NEW PHYTOLOGIST

Origin and evolution of the octoploid strawberry genome

(2019) Patrick P. Edger et al.   NATURE GENETICS

The genome sequence of segmental allotetraploid peanut Arachis hypogaea

(2019) David J. Bertioli et al.   NATURE GENETICS

Diversity and Determinants of Meiotic Recombination Landscapes

(2019) Mateusz Zelkowski et al.   TRENDS IN GENETICS

Pervasive hybridizations in the history of wheat relatives

(2019) Sylvain Glémin et al.   Science Advances

Meiotic Recombination: Mixing It Up in Plants

(2018) Yingxiang Wang et al.   Annual Review of Plant Biology

Epigenetic perspectives on the evolution and domestication of polyploid plant and crops

(2018) Mingquan Ding et al.   CURRENT OPINION IN PLANT BIOLOGY

Nucleosomes and DNA methylation shape meiotic DSB frequency inArabidopsis thalianatransposons and gene regulatory regions

(2018) Kyuha Choi et al.   GENOME RESEARCH

Transgenerationally Precipitated Meiotic Chromosome Instability Fuels Rapid Karyotypic Evolution and Phenotypic Diversity in an Artificially Constructed Allotetraploid Wheat (AADD)

(2018) Xiaowan Gou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus

(2018) Bhavna Hurgobin et al.   PLANT BIOTECHNOLOGY JOURNAL

High-resolution crossover mapping reveals similarities and differences of male and female recombination in maize

(2018) Penny M. A. Kianian et al.   Nature Communications

Genome sequence of the progenitor of wheat A subgenome Triticum urartu

(2018) Hong-Qing Ling et al.   NATURE

Where to Cross Over? Defining Crossover Sites in Plants

(2018) Julia Dluzewska et al.   Frontiers in Genetics

High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism

(2017) Benoit Darrier et al.   GENETICS

Genome sequencing reveals the origin of the allotetraploid Arabidopsis suecica

(2017) Polina Yu. Novikova et al.   MOLECULAR BIOLOGY AND EVOLUTION

Homoeologous exchanges cause extensive dosage-dependent gene expression changes in an allopolyploid crop

(2017) Andrew Lloyd et al.   NEW PHYTOLOGIST

Surviving a Genome Collision: Genomic Signatures of Allopolyploidization in the Recent Crop Species

(2017) Birgit Samans et al.   Plant Genome

High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism

(2017) Benoit Darrier et al.   GENETICS

Extensive homoeologous genome exchanges in allopolyploid crops revealed by mRNAseq-based visualization

(2016) Zhesi He et al.   PLANT BIOTECHNOLOGY JOURNAL

CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing

(2016) Eric Talevich et al.   PLoS Computational Biology

Transcriptome asymmetry in synthetic and natural allotetraploid wheats, revealed by RNA-sequencing

(2015) Xutong Wang et al.   NEW PHYTOLOGIST

DNA Crossover Motifs Associated with Epigenetic Modifications Delineate Open Chromatin Regions in Arabidopsis

(2015) Shay Shilo et al.   PLANT CELL

Meiotic recombination hotspots - a comparative view

(2015) Kyuha Choi et al.   PLANT JOURNAL

Dissecting meiotic recombination based on tetrad analysis by single-microspore sequencing in maize

(2015) Xiang Li et al.   Nature Communications

The chloroplast view of the evolution of polyploid wheat

(2014) Piotr Gornicki et al.   NEW PHYTOLOGIST

The BOY NAMED SUE Quantitative Trait Locus Confers Increased Meiotic Stability to an Adapted Natural Allopolyploid of Arabidopsis

(2014) I. M. Henry et al.   PLANT CELL

Genome rearrangements derived from homoeologous recombination following allopolyploidy speciation in coffee

(2014) Philippe Lashermes et al.   PLANT JOURNAL

Sequencing of Chloroplast Genomes from Wheat, Barley, Rye and Their Relatives Provides a Detailed Insight into the Evolution of the Triticeae Tribe

(2014) Christopher P. Middleton et al.   PLoS One

Ancient hybridizations among the ancestral genomes of bread wheat

(2014) T. Marcussen et al.   SCIENCE

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

Genetic and Epigenetic Aspects of Polyploid Evolution in Plants

(2013) A. Madlung et al.   CYTOGENETIC AND GENOME RESEARCH

Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters

(2013) Kyuha Choi et al.   NATURE GENETICS

Intrinsic karyotype stability and gene copy number variations may have laid the foundation for tetraploid wheat formation

(2013) H. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana

(2013) Erik Wijnker et al.   eLife

Genome Evolution Due to Allopolyploidization in Wheat

(2012) M. Feldman et al.   GENETICS

Homoeolog expression bias and expression level dominance in allopolyploid cotton

(2012) M-J Yoo et al.   HEREDITY

Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae)

(2012) M. Chester et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Wheat Hybridization and Polyploidization Results in Deregulation of Small RNAs

(2011) Michal Kenan-Eichler et al.   GENETICS

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Evolution of Polyploid Triticum Wheats under Cultivation: The Role of Domestication, Natural Hybridization and Allopolyploid Speciation in their Diversification

(2011) Y. Matsuoka   PLANT AND CELL PHYSIOLOGY

Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus

(2011) Z. Xiong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome evolution in allopolyploid wheat—a revolutionary reprogramming followed by gradual changes

(2009) Moshe Feldman et al.   Journal of Genetics and Genomics

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

Acc homoeoloci and the evolution of wheat genomes

(2008) D. Chalupska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Plasticity and the Diversity of Polyploid Plants

(2008) A. R. Leitch et al.   SCIENCE