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Title
The RNA exosome shapes the expression of key protein-coding genes
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2020-07-03
DOI
10.1093/nar/gkaa594
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- Transcriptional Control by Premature Termination: A Forgotten Mechanism
- (2019) Kinga Kamieniarz-Gdula et al. TRENDS IN GENETICS
- Determinants of enhancer and promoter activities of regulatory elements
- (2019) Robin Andersson et al. NATURE REVIEWS GENETICS
- A Functional Link between Nuclear RNA Decay and Transcriptional Control Mediated by the Polycomb Repressive Complex 2
- (2019) William Garland et al. Cell Reports
- Nuclear sorting of RNA
- (2019) William Garland et al. Wiley Interdisciplinary Reviews-RNA
- The Integrator Complex Attenuates Promoter-Proximal Transcription at Protein-Coding Genes
- (2019) Nathan D. Elrod et al. MOLECULAR CELL
- Transcriptional Pause Sites Delineate Stable Nucleosome-Associated Premature Polyadenylation Suppressed by U1 snRNP
- (2018) Anthony C. Chiu et al. MOLECULAR CELL
- Controlling nuclear RNA levels
- (2018) Manfred Schmid et al. NATURE REVIEWS GENETICS
- The RNA Exosome Adaptor ZFC3H1 Functionally Competes with Nuclear Export Activity to Retain Target Transcripts
- (2018) Toomas Silla et al. Cell Reports
- Efficient termination of nuclear lncRNA transcription promotes mitochondrial genome maintenance
- (2018) Dorine Jeanne Mariëtte du Mee et al. eLife
- The RNA exosome contributes to gene expression regulation during stem cell differentiation
- (2018) Marta Lloret-Llinares et al. NUCLEIC ACIDS RESEARCH
- SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA
- (2018) Nevena Cvetesic et al. GENOME RESEARCH
- Comprehensive profiling of the fission yeast transcription start site activity during stress and media response
- (2018) Malte Thodberg et al. NUCLEIC ACIDS RESEARCH
- Nuclear RNA Decay Pathways Aid Rapid Remodeling of Gene Expression in Yeast
- (2017) Stefan Bresson et al. MOLECULAR CELL
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- ARS2 is a general suppressor of pervasive transcription
- (2017) Claudia Iasillo et al. NUCLEIC ACIDS RESEARCH
- Targeting the nuclear RNA exosome: Poly(A) binding proteins enter the stage
- (2017) Nicola Meola et al. RNA Biology
- Mutually Exclusive CBC-Containing Complexes Contribute to RNA Fate
- (2017) Simone Giacometti et al. Cell Reports
- Evolutionarily Conserved Polyadenosine RNA Binding Protein Nab2 Cooperates with Splicing Machinery To Regulate the Fate of Pre-mRNA
- (2016) Sharon Soucek et al. MOLECULAR AND CELLULAR BIOLOGY
- Identification of a Nuclear Exosome Decay Pathway for Processed Transcripts
- (2016) Nicola Meola et al. MOLECULAR CELL
- Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters
- (2016) Yun Chen et al. NATURE GENETICS
- The regulation and functions of the nuclear RNA exosome complex
- (2016) Cornelia Kilchert et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase
- (2016) Hans Ienasescu et al. Database-The Journal of Biological Databases and Curation
- Native Elongating Transcript Sequencing Reveals Human Transcriptional Activity at Nucleotide Resolution
- (2015) Andreas Mayer et al. CELL
- Human Gene Promoters Are Intrinsically Bidirectional
- (2015) Robin Andersson et al. MOLECULAR CELL
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- The Human Nuclear Exosome Targeting Complex Is Loaded onto Newly Synthesized RNA to Direct Early Ribonucleolysis
- (2015) Michal Lubas et al. Cell Reports
- Identification of TNF- -Responsive Promoters and Enhancers in the Intestinal Epithelial Cell Model Caco-2
- (2014) M. Boyd et al. DNA RESEARCH
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- A promoter-level mammalian expression atlas
- (2014) NATURE
- Nuclear stability and transcriptional directionality separate functionally distinct RNA species
- (2014) Robin Andersson et al. Nature Communications
- Dealing with Pervasive Transcription
- (2013) Torben Heick Jensen et al. MOLECULAR CELL
- Promoter directionality is controlled by U1 snRNP and polyadenylation signals
- (2013) Albert E. Almada et al. NATURE
- Extensive transcriptional heterogeneity revealed by isoform profiling
- (2013) Vicent Pelechano et al. NATURE
- CBC–ARS2 stimulates 3′-end maturation of multiple RNA families and favors cap-proximal processing
- (2013) Marie Hallais et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The human cap-binding complex is functionally connected to the nuclear RNA exosome
- (2013) Peter Refsing Andersen et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality
- (2013) Evgenia Ntini et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
- (2013) Yang Liao et al. NUCLEIC ACIDS RESEARCH
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Rrp6p Controls mRNA Poly(A) Tail Length and Its Decoration with Poly(A) Binding Proteins
- (2012) Manfred Schmid et al. MOLECULAR CELL
- Interaction Profiling Identifies the Human Nuclear Exosome Targeting Complex
- (2011) Michal Lubas et al. MOLECULAR CELL
- Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome
- (2011) R. A. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- The Many Pathways of RNA Degradation
- (2009) Jonathan Houseley et al. CELL
- JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
- (2009) Elodie Portales-Casamar et al. NUCLEIC ACIDS RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Asap: A Framework for Over-Representation Statistics for Transcription Factor Binding Sites
- (2008) Troels T. Marstrand et al. PLoS One
- Divergent Transcription from Active Promoters
- (2008) Amy C. Seila et al. SCIENCE
- RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters
- (2008) Pascal Preker et al. SCIENCE
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
- The exosome: a multipurpose RNA-decay machine
- (2008) Manfred Schmid et al. TRENDS IN BIOCHEMICAL SCIENCES
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