Tagsteady: A metabarcoding library preparation protocol to avoid false assignment of sequences to samples

Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure

(2018) Kristine Bohmann et al.   Molecular Ecology Resources

Towards an eDNA metabarcode-based performance indicator for full-scale municipal wastewater treatment plants

(2018) Thorsten Stoeck et al.   WATER RESEARCH

Promises and pitfalls of using high-throughput sequencing for diet analysis

(2018) Antton Alberdi et al.   Molecular Ecology Resources

Taxonomy-free molecular diatom index for high-throughput eDNA biomonitoring

(2017) Laure Apothéloz-Perret-Gentil et al.   Molecular Ecology Resources

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

(2017) Sarah Siu Tze Mak et al.   GigaScience

Synchronous genetic turnovers across Western Eurasia in Late Pleistocene collared lemmings

(2016) Eleftheria Palkopoulou et al.   GLOBAL CHANGE BIOLOGY

Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects

(2016) Vasco Elbrecht et al.   PeerJ

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

(2015) Ida Baerholm Schnell et al.   Molecular Ecology Resources

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

(2015) Philippe Esling et al.   NUCLEIC ACIDS RESEARCH

Forestry impacts on the hidden fungal biodiversity associated with bryophytes

(2014) Marie L. Davey et al.   FEMS MICROBIOLOGY ECOLOGY

Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter

(2014) Paul R Hope et al.   Frontiers in Zoology

Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias

(2014) Laurence J. Clarke et al.   Molecular Ecology Resources

Comprehensive Evaluation and Optimization of Amplicon Library Preparation Methods for High-Throughput Antibody Sequencing

(2014) Ulrike Menzel et al.   PLoS One

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

(2013) Matthieu Leray et al.   Frontiers in Zoology

Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species

(2013) Melissa E Carew et al.   Frontiers in Zoology

Host- and tissue-specificity of moss-associated Galerina and Mycena determined from amplicon pyrosequencing data

(2013) Marie L. Davey et al.   Fungal Ecology

Arctic root-associated fungal community composition reflects environmental filtering

(2013) Rakel Blaalid et al.   MOLECULAR ECOLOGY

Low host specificity of root-associated fungi at an Arctic site

(2013) Synnøve Botnen et al.   MOLECULAR ECOLOGY

ITS1 versus ITS2 as DNA metabarcodes for fungi

(2013) R. Blaalid et al.   Molecular Ecology Resources

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

(2013) M. De Barba et al.   Molecular Ecology Resources

A DNA Metabarcoding Study of a Primate Dietary Diversity and Plasticity across Its Entire Fragmented Range

(2013) Erwan Quéméré et al.   PLoS One

Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi

(2013) Daniel L. Lindner et al.   Ecology and Evolution

Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture

(2012) N. Rohland et al.   GENOME RESEARCH

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan

(2012) WASIM SHEHZAD et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Library Preparation and Multiplex Capture for Massive Parallel Sequencing Applications Made Efficient and Easy

(2012) Mårten Neiman et al.   PLoS One

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing

(2011) Kristine Bohmann et al.   PLoS One

Reducing chimera formation during PCR amplification to ensure accurate genotyping

(2010) R.P. Smyth et al.   GENE

Titration-free massively parallel pyrosequencing using trace amounts of starting material

(2010) Zongli Zheng et al.   NUCLEIC ACIDS RESEARCH

New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: thetrnL approach

(2009) ALICE VALENTINI et al.   Molecular Ecology Resources

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

(2009) Iwanka Kozarewa et al.   NATURE METHODS

Accurate whole human genome sequencing using reversible terminator chemistry

(2008) David R. Bentley et al.   NATURE

Enzymes used in molecular biology: a useful guide

(2008) Laure Rittié et al.   Journal of Cell Communication and Signaling