The effects of environment and ontogeny on the skin microbiome of two Stegastes damselfishes (Pomacentridae) from the eastern Caribbean Sea

Using fish models to investigate the links between microbiome and social behaviour: The next step for translational microbiome research?

(2019) Marta C. Soares et al.   FISH AND FISHERIES

A Risky Business? Habitat and Social Behavior Impact Skin and Gut Microbiomes in Caribbean Cleaning Gobies

(2019) Raquel Xavier et al.   Frontiers in Microbiology

Microbiome of Co-cultured Fish Exhibits Host Selection and Niche Differentiation at the Organ Scale

(2019) Zhimin Zhang et al.   Frontiers in Microbiology

Effects of disease, antibiotic treatment and recovery trajectory on the microbiome of farmed seabass (Dicentrarchus labrax)

(2019) Daniela Rosado et al.   Scientific Reports

The Inner Workings of the Outer Surface: Skin and Gill Microbiota as Indicators of Changing Gut Health in Yellowtail Kingfish

(2018) Thibault P. R. A. Legrand et al.   Frontiers in Microbiology

The Gills of Reef Fish Support a Distinct Microbiome Influenced by Host-Specific Factors

(2018) Zoe A. Pratte et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Localized Defecation in Territorial Herbivorous Fishes

(2018) Matthew D. Nicholson et al.   COPEIA

Shifts in the Skin-Associated Microbiota of Hatchery-Reared Common Snook Centropomus undecimalis During Acclimation to the Wild

(2018) Andrea M. Tarnecki et al.   MICROBIAL ECOLOGY

Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet

(2018) Marlène Chiarello et al.   Microbiome

The Change of Teleost Skin Commensal Microbiota Is Associated With Skin Mucosal Transcriptomic Responses During Parasitic Infection by Ichthyophthirius multifillis

(2018) Xiaoting Zhang et al.   Frontiers in Immunology

Characterization of the skin and gill microbiomes of the farmed seabass (Dicentrarchus labrax) and seabream (Sparus aurata)

(2018) Daniela Rosado et al.   AQUACULTURE

Microbiome patterns across the gastrointestinal tract of the rabbitfish Siganus fuscescens

(2017) Shaun Nielsen et al.   PeerJ

Microbiome disruption and recovery in the fish Gambusia affinis following exposure to broad-spectrum antibiotic

(2017) Jeanette Carlson et al.   Infection and Drug Resistance

Vertically and horizontally transmitted microbial symbionts shape the gut microbiota ontogenesis of a skin-mucus feeding discus fish progeny

(2017) François-Étienne Sylvain et al.   Scientific Reports

Environmental filtering decreases with fish development for the assembly of gut microbiota

(2016) Qingyun Yan et al.   ENVIRONMENTAL MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Transition from freshwater to seawater reshapes the skin-associated microbiota of Atlantic salmon

(2016) Jep Lokesh et al.   Scientific Reports

Whole gut microbiome composition of damselfish and cardinalfish before and after reef settlement

(2016) Darren J. Parris et al.   PeerJ

Temporal variability and impact of coral diseases and bleaching in La Parguera, Puerto Rico from 2003–2007

(2016) Ernesto Weil et al.   CARIBBEAN JOURNAL OF SCIENCE

Topographical Mapping of the Rainbow Trout (Oncorhynchus mykiss) Microbiome Reveals a Diverse Bacterial Community with Antifungal Properties in the Skin

(2015) Liam Lowrey et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The biogeography of the atlantic salmon (Salmo salar) gut microbiome

(2015) Martin S Llewellyn et al.   ISME Journal

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Community Structure of Skin Microbiome of Gulf Killifish, Fundulus grandis, Is Driven by Seasonality and Not Exposure to Oiled Sediments in a Louisiana Salt Marsh

(2015) Andrea M. Larsen et al.   MICROBIAL ECOLOGY

Diet strongly influences the gut microbiota of surgeonfishes

(2015) Sou Miyake et al.   MOLECULAR ECOLOGY

Exposure of clownfish larvae to suspended sediment levels found on the Great Barrier Reef: Impacts on gill structure and microbiome

(2015) Sybille Hess et al.   Scientific Reports

The vocabulary of microbiome research: a proposal

(2015) Julian R. Marchesi et al.   Microbiome

The Earth Microbiome project: successes and aspirations

(2014) Jack A Gilbert et al.   BMC BIOLOGY

A method for analysis of phenotypic change for phenotypes described by high-dimensional data

(2014) M L Collyer et al.   HEREDITY

Farming behaviour of reef fishes increases the prevalence of coral disease associated microbes and black band disease

(2014) J. M. Casey et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Resource use of two damselfishes, Stegastes planifrons and Stegastes adustus, on Guadeloupean reefs (Lesser Antilles): Inference from stomach content and stable isotope analysis

(2013) Charlotte R. Dromard et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Herbivores strongly influence algal recruitment in both coral- and algal-dominated coral reef habitats

(2013) C Doropoulos et al.   MARINE ECOLOGY PROGRESS SERIES

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Habitat and Species Differences in Prevalence and Intensity of Neobenedenia Melleni (Monogenea: Capsalidae) on Sympatric Caribbean Surgeonfishes (Acanthuridae)

(2009) Paul C. Sikkel et al.   JOURNAL OF PARASITOLOGY