Computational investigation for modeling the protein–protein interaction of TasA(28–261)–TapA(33–253): a decisive process in biofilm formation by Bacillus subtilis

Bacterial biofilm and associated infections

(2018) Muhsin Jamal et al.   Journal of the Chinese Medical Association

Structural changes of TasA in biofilm formation ofBacillus subtilis

(2018) Anne Diehl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacterial Extracellular Matrix Protein TapA Is a Two‐Domain Partially Disordered Protein

(2018) Razan Abbasi et al.   CHEMBIOCHEM

Computational investigation of mechanistic insights of Aβ42 interactions against extracellular domain of nAChRα7 in Alzheimer’s disease

(2018) Mubashir Hassan et al.   INTERNATIONAL JOURNAL OF NEUROSCIENCE

The ClusPro web server for protein–protein docking

(2017) Dima Kozakov et al.   Nature Protocols

Amyloid Structures as Biofilm Matrix Scaffolds

(2016) Agustina Taglialegna et al.   JOURNAL OF BACTERIOLOGY

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Structure, Dynamics, and Interaction of Mycobacterium tuberculosis (Mtb) DprE1 and DprE2 Examined by Molecular Modeling, Simulation, and Electrostatic Studies

(2015) Isha Bhutani et al.   PLoS One

ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers

(2014) B. G. Pierce et al.   BIOINFORMATICS

Protein-Protein Docking: From Interaction to Interactome

(2014) Ilya A. Vakser   BIOPHYSICAL JOURNAL

Molecular mechanisms involved inBacillus subtilisbiofilm formation

(2014) Benjamin Mielich-Süss et al.   ENVIRONMENTAL MICROBIOLOGY

Functional Analysis of the Accessory Protein TapA in Bacillus subtilis Amyloid Fiber Assembly

(2014) D. Romero et al.   JOURNAL OF BACTERIOLOGY

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

(2013) Sander Pronk et al.   BIOINFORMATICS

Sticking together: building a biofilm the Bacillus subtilis way

(2013) Hera Vlamakis et al.   NATURE REVIEWS MICROBIOLOGY

Homology modeling and virtual screening approaches to identify potent inhibitors of VEB-1 β-lactamase

(2013) Abdelmonaem Messaoudi et al.   Theoretical Biology and Medical Modelling

Identification of Bacillus subtilis SipW as a Bifunctional Signal Peptidase That Controls Surface-Adhered Biofilm Formation

(2012) R. Terra et al.   JOURNAL OF BACTERIOLOGY

Structural characterization of a D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus

(2012) Simon J. Holton et al.   JOURNAL OF STRUCTURAL BIOLOGY

Database resources of the National Center for Biotechnology Information

(2012)   NUCLEIC ACIDS RESEARCH

COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes

(2011) A. Vangone et al.   BIOINFORMATICS

An accessory protein required for anchoring and assembly of amyloid fibres in B. subtilis biofilms

(2011) Diego Romero et al.   MOLECULAR MICROBIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

PONDR-FIT: A meta-predictor of intrinsically disordered amino acids

(2010) Bin Xue et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

New antibiotic agents and approaches to treat biofilm-associated infections

(2010) Anthony S Lynch et al.   EXPERT OPINION ON THERAPEUTIC PATENTS

Functional amyloid in Pseudomonas

(2010) Morten S. Dueholm et al.   MOLECULAR MICROBIOLOGY

The biofilm matrix

(2010) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Amyloid fibers provide structural integrity to Bacillus subtilis biofilms

(2010) D. Romero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identifying and Characterizing Binding Sites and Assessing Druggability

(2009) Thomas A. Halgren   Journal of Chemical Information and Modeling

FireDock: a web server for fast interaction refinement in molecular docking

(2008) E. Mashiach et al.   NUCLEIC ACIDS RESEARCH