Parameterizing sequence alignment with an explicit evolutionary model
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Parameterizing sequence alignment with an explicit evolutionary model
Authors
Keywords
Evolutionary models, Hidden Markov models, Insertions and deletions
Journal
BMC BIOINFORMATICS
Volume 16, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-12-10
DOI
10.1186/s12859-015-0832-5
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- UniProt: a hub for protein information
- (2014) NUCLEIC ACIDS RESEARCH
- Adjusting scoring matrices to correct overextended alignments
- (2013) L. J. Mills et al. BIOINFORMATICS
- Dfam: a database of repetitive DNA based on profile hidden Markov models
- (2012) Travis J. Wheeler et al. NUCLEIC ACIDS RESEARCH
- Evolutionary inference via the Poisson Indel Process
- (2012) Alexandre Bouchard-Côté et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- FASTSP: linear time calculation of alignment accuracy
- (2011) S. Mirarab et al. BIOINFORMATICS
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities
- (2010) Y. Liu et al. BIOINFORMATICS
- Homologous over-extension: a challenge for iterative similarity searches
- (2010) Mileidy W. Gonzalez et al. NUCLEIC ACIDS RESEARCH
- Quality measures for protein alignment benchmarks
- (2010) Robert C. Edgar NUCLEIC ACIDS RESEARCH
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- SAM-T08, HMM-based protein structure prediction
- (2009) K. Karplus NUCLEIC ACIDS RESEARCH
- Problems and Solutions for Estimating Indel Rates and Length Distributions
- (2008) Reed A. Cartwright MOLECULAR BIOLOGY AND EVOLUTION
- Probabilistic Phylogenetic Inference with Insertions and Deletions
- (2008) Elena Rivas et al. PLoS Computational Biology
- A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
- (2008) Sean R. Eddy PLoS Computational Biology
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now