NMF-mGPU: non-negative matrix factorization on multi-GPU systems

Gene Expression Profiling Reveals Distinct Molecular Signatures Associated With the Rupture of Intracranial Aneurysm

(2014) Hirofumi Nakaoka et al.   STROKE

cudaMap: a GPU accelerated program for gene expression connectivity mapping

(2013) Darragh G McArt et al.   BMC BIOINFORMATICS

PGMRA: a web server for (phenotype x genotype) many-to-many relation analysis in GWAS

(2013) J. Arnedo et al.   NUCLEIC ACIDS RESEARCH

Protein docking using case-based reasoning

(2013) Anisah W. Ghoorah et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

CloudNMF: A MapReduce Implementation of Nonnegative Matrix Factorization for Large-scale Biological Datasets

(2013) Ruiqi Liao et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

ArrayExpress update—trends in database growth and links to data analysis tools

(2012) Gabriella Rustici et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Excited-State Electronic Structure with Configuration Interaction Singles and Tamm–Dancoff Time-Dependent Density Functional Theory on Graphical Processing Units

(2011) Christine M. Isborn et al.   Journal of Chemical Theory and Computation

A very fast algorithm for matrix factorization

(2011) Vladimir Nikulin et al.   STATISTICS & PROBABILITY LETTERS

A flexible R package for nonnegative matrix factorization

(2010) Renaud Gaujoux et al.   BMC BIOINFORMATICS

GPU computing for systems biology

(2010) L. Dematte et al.   BRIEFINGS IN BIOINFORMATICS

The GPU Computing Era

(2010) John Nickolls et al.   IEEE MICRO

PIConGPU: A Fully Relativistic Particle-in-Cell Code for a GPU Cluster

(2010) Heiko Burau et al.   IEEE TRANSACTIONS ON PLASMA SCIENCE

A global map of human gene expression

(2010) Margus Lukk et al.   NATURE BIOTECHNOLOGY

Integrative genomic analyses of neurofibromatosis tumours identify SOX9 as a biomarker and survival gene

(2009) Shyra J. Miller et al.   EMBO Molecular Medicine

Parallel Nonnegative Matrix Factorization Algorithm on the Distributed Memory Platform

(2009) Chao Dong et al.   INTERNATIONAL JOURNAL OF PARALLEL PROGRAMMING

SENT: semantic features in text

(2009) M. Vazquez et al.   NUCLEIC ACIDS RESEARCH

Position-dependent motif characterization using non-negative matrix factorization

(2008) Lucie N. Hutchins et al.   BIOINFORMATICS

GPU for Parallel On-Board Hyperspectral Image Processing

(2008) Javier Setoain et al.   INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS

bioNMF: a web-based tool for nonnegative matrix factorization in biology

(2008) E. Mejia-Roa et al.   NUCLEIC ACIDS RESEARCH

Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology

(2008) Karthik Devarajan   PLoS Computational Biology