Protein docking using case-based reasoning

Spatial clustering of protein binding sites for template based protein docking

(2011) Anisah W. Ghoorah et al.   BIOINFORMATICS

InterEvol database: exploring the structure and evolution of protein complex interfaces

(2011) Guilhem Faure et al.   NUCLEIC ACIDS RESEARCH

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins

(2011) B. A. Shoemaker et al.   NUCLEIC ACIDS RESEARCH

Protein-Protein Complex Structure Predictions by Multimeric Threading and Template Recombination

(2011) Srayanta Mukherjee et al.   STRUCTURE

3did: identification and classification of domain-based interactions of known three-dimensional structure

(2010) A. Stein et al.   NUCLEIC ACIDS RESEARCH

The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms

(2010) Q. Xu et al.   NUCLEIC ACIDS RESEARCH

Docking and scoring protein interactions: CAPRI 2009

(2010) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein-protein docking benchmark version 4.0

(2010) Howook Hwang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A survey of available tools and web servers for analysis of protein-protein interactions and interfaces

(2009) N. Tuncbag et al.   BRIEFINGS IN BIOINFORMATICS

GWIDD: Genome-wide protein docking database

(2009) Petras J. Kundrotas et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions

(2008) D. W. Ritchie et al.   BIOINFORMATICS

DARS (Decoys As the Reference State) Potentials for Protein-Protein Docking

(2008) Gwo-Yu Chuang et al.   BIOPHYSICAL JOURNAL

SCOWLP classification: Structural comparison and analysis of protein binding regions

(2008) Joan Teyra et al.   BMC BIOINFORMATICS

Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations

(2008) Guillaume Launay et al.   BMC BIOINFORMATICS

Homology-based modeling of 3D structures of protein–protein complexes using alignments of modified sequence profiles

(2008) Petras J. Kundrotas et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

PiSite: a database of protein interaction sites using multiple binding states in the PDB

(2008) M. Higurashi et al.   NUCLEIC ACIDS RESEARCH

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH