Integrative Analyses of Widely Targeted Metabolic Profiling and Transcriptome Data Reveals Molecular Insight into Metabolomic Variations during Apple (Malus domestica) Fruit Development and Ripening

Rewiring of the Fruit Metabolome in Tomato Breeding

(2018) Guangtao Zhu et al.   CELL

Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions

(2018) Si Wu et al.   Molecular Plant

UPLC-HRMS-based untargeted metabolic profiling reveals changes in chickpea (Cicer arietinum ) metabolome following long-term drought stress

(2018) Naeem Khan et al.   PLANT CELL AND ENVIRONMENT

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

(2017) Nicolas Daccord et al.   NATURE GENETICS

Single-base methylome analysis reveals dynamic epigenomic differences associated with water deficit in apple

(2017) Jidi Xu et al.   PLANT BIOTECHNOLOGY JOURNAL

Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing

(2014) Madeleine Ernst et al.   NATURAL PRODUCT REPORTS

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

Comparative proteomic and metabolomic profiling of citrus fruit with enhancement of disease resistance by postharvest heat treatment

(2013) Ze Yun et al.   BMC PLANT BIOLOGY

What controls fleshy fruit acidity? A review of malate and citrate accumulation in fruit cells

(2013) A. Etienne et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics

(2013) Wei Chen et al.   Molecular Plant

Functional Characterization of Proanthocyanidin Pathway Enzymes from Tea and Their Application for Metabolic Engineering

(2013) Y. Pang et al.   PLANT PHYSIOLOGY

The Shikimate Pathway and Aromatic Amino Acid Biosynthesis in Plants

(2012) Hiroshi Maeda et al.   Annual Review of Plant Biology

Utility of Metabolomics toward Assessing the Metabolic Basis of Quality Traits in Apple Fruit with an Emphasis on Antioxidants

(2012) Daniel Cuthbertson et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Expression Patterns of Genes Involved in Sugar Metabolism and Accumulation during Apple Fruit Development

(2012) Mingjun Li et al.   PLoS One

Antioxidant treatment alters metabolism associated with internal browning in ‘Braeburn’ apples during controlled atmosphere storage

(2012) Jinwook Lee et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize

(2012) C. Riedelsheimer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Yield response, pest damage and fruit quality parameters of scab-resistant and scab-susceptible apple cultivars in integrated and organic production systems

(2012) Imre J. Holb et al.   SCIENTIA HORTICULTURAE

Mass Spectrometry Strategies in Metabolomics

(2011) Zhentian Lei et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Liquid chromatography–mass spectrometry-based metabolomics for authenticity assessment of fruit juices

(2011) Lukas Vaclavik et al.   Metabolomics

Metabolic changes in 1-methylcyclopropene (1-MCP)-treated ‘Empire’ apple fruit during storage

(2011) Jinwook Lee et al.   Metabolomics

Intestinal transit and systemic metabolism of apple polyphenols

(2010) Kathrin Kahle et al.   EUROPEAN JOURNAL OF NUTRITION

Developmental changes of carbohydrates, organic acids, amino acids, and phenolic compounds in ‘Honeycrisp’ apple flesh

(2010) Yanzi Zhang et al.   FOOD CHEMISTRY

Metabolic profiling of strawberry (Fragaria×ananassa Duch.) during fruit development and maturation

(2010) Juanjuan Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Distribution and biosynthesis of flavan-3-ols in Camellia sinensis seedlings and expression of genes encoding biosynthetic enzymes

(2010) Hiroshi Ashihara et al.   PHYTOCHEMISTRY

Metabolomic Change Precedes Apple Superficial Scald Symptoms

(2009) David R. Rudell et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Global gene expression analysis of apple fruit development from the floral bud to ripe fruit

(2008) Bart J Janssen et al.   BMC PLANT BIOLOGY

Prestorage Ultraviolet−White Light Irradiation Alters Apple Peel Metabolome

(2008) David R. Rudell et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Reconfiguration of the Achene and Receptacle Metabolic Networks during Strawberry Fruit Development

(2008) A. Fait et al.   PLANT PHYSIOLOGY