REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies

Transcription Factor ZBED6 Mediates IGF2 Gene Expression by Regulating Promoter Activity and DNA Methylation in Myoblasts

(2014) Yong-Zhen Huang et al.   Scientific Reports

Information-theoretic evaluation of predicted ontological annotations

(2013) Wyatt T. Clark et al.   BIOINFORMATICS

LHX2 Is Necessary for the Maintenance of Optic Identity and for the Progression of Optic Morphogenesis

(2013) A. Roy et al.   JOURNAL OF NEUROSCIENCE

Attenuation of Krüppel-Like Factor 4 Facilitates Carcinogenesis by Inducing G1/S Phase Arrest in Clear Cell Renal Cell Carcinoma

(2013) Erlin Song et al.   PLoS One

A guide to best practices for Gene Ontology (GO) manual annotation

(2013) R. Balakrishnan et al.   Database-The Journal of Biological Databases and Curation

Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum

(2012) Kevin M Preuss et al.   BMC GENOMICS

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

PSCL: Predicting Protein Subcellular Localization Based on Optimal Functional Domains

(2012) Kai Wang et al.   PROTEIN AND PEPTIDE LETTERS

System approaches reveal the molecular networks involved in neural stem cell differentiation

(2012) Kai Wang et al.   Protein & Cell

Maternal and Zygotic Control of Zebrafish Dorsoventral Axial Patterning

(2011) Yvette G. Langdon et al.   Annual Review of Genetics

The Orchestration of Mammalian Tissue Morphogenesis through a Series of Coherent Feed-forward Loops

(2011) Qing Xie et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

AnimalTFDB: a comprehensive animal transcription factor database

(2011) H.-M. Zhang et al.   NUCLEIC ACIDS RESEARCH

MINT, the molecular interaction database: 2012 update

(2011) Luana Licata et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Predicting Functions of Proteins in Mouse Based on Weighted Protein-Protein Interaction Network and Protein Hybrid Properties

(2011) Lele Hu et al.   PLoS One

Predicting Transcriptional Activity of Multiple Site p53 Mutants Based on Hybrid Properties

(2011) Tao Huang et al.   PLoS One

The maternal muscle determinant in the ascidian egg

(2011) Hiroki Nishida   Wiley Interdisciplinary Reviews-Developmental Biology

XanthomonasAvrBs3 Family-Type III Effectors: Discovery and Function

(2010) Jens Boch et al.   Annual Review of Phytopathology

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Identification and Genomic Analysis of Transcription Factors in Archaeal Genomes Exemplifies Their Functional Architecture and Evolutionary Origin

(2010) E. Perez-Rueda et al.   MOLECULAR BIOLOGY AND EVOLUTION

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

(2010) He Zhang et al.   NUCLEIC ACIDS RESEARCH

Pattern Recognition Software and Techniques for Biological Image Analysis

(2010) Lior Shamir et al.   PLoS Computational Biology

FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database

(2009) Ulrike Pfreundt et al.   NUCLEIC ACIDS RESEARCH

ZBED6, a Novel Transcription Factor Derived from a Domesticated DNA Transposon Regulates IGF2 Expression and Muscle Growth

(2009) Ellen Markljung et al.   PLOS BIOLOGY

TFCat: the curated catalog of mouse and human transcription factors

(2009) Debra L Fulton et al.   GENOME BIOLOGY

Prediction of Peptidase Category Based on Functional Domain Composition

(2008) XiaoChun Xu et al.   JOURNAL OF PROTEOME RESEARCH

The Double-Histone-Acetyltransferase Complex ATAC Is Essential for Mammalian Development

(2008) S. Guelman et al.   MOLECULAR AND CELLULAR BIOLOGY