DectICO: an alignment-free supervised metagenomic classification method based on feature extraction and dynamic selection

Intrinsic correlation of oligonucleotides: A novel genomic signature for metagenome analysis

(2014) Xiao Ding et al.   JOURNAL OF THEORETICAL BIOLOGY

Comparison of Metatranscriptomic Samples Based on k-Tuple Frequencies

(2014) Ying Wang et al.   PLoS One

A Kernel-Based Multivariate Feature Selection Method for Microarray Data Classification

(2014) Shiquan Sun et al.   PLoS One

Alignment-free supervised classification of metagenomes by recursive SVM

(2013) Hongfei Cui et al.   BMC GENOMICS

Role of the gut microbiota in human nutrition and metabolism

(2013) Balakrishnan S Ramakrishna   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample

(2012) Y. Wang et al.   BIOINFORMATICS

Comparison of metagenomic samples using sequence signatures

(2012) Bai Jiang et al.   BMC GENOMICS

Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective

(2012) H. Teeling et al.   BRIEFINGS IN BIOINFORMATICS

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

The role of the gut microbiota in nutrition and health

(2012) Harry J. Flint et al.   Nature Reviews Gastroenterology & Hepatology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

HabiSign: a novel approach for comparison of metagenomes and rapid identification of habitat-specific sequences

(2011) Tarini Ghosh et al.   BMC BIOINFORMATICS

A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using l-tuples

(2011) Yu-Wei Wu et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Metagenomic Analyses: Past and Future Trends

(2010) Carola Simon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of multiple metagenomes using phylogenetic networks based on ecological indices

(2010) Suparna Mitra et al.   ISME Journal

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

A Primer on Metagenomics

(2010) John C. Wooley et al.   PLoS Computational Biology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methods for comparative metagenomics

(2009) Daniel H Huson et al.   BMC BIOINFORMATICS

Analysis and comparison of very large metagenomes with fast clustering and functional annotation

(2009) Weizhong Li   BMC BIOINFORMATICS

Unsupervised statistical clustering of environmental shotgun sequences

(2009) Andrey Kislyuk et al.   BMC BIOINFORMATICS

The NIH Human Microbiome Project

(2009) et al.   GENOME RESEARCH

SlimPLS: A Method for Feature Selection in Gene Expression-Based Disease Classification

(2009) Michael Gutkin et al.   PLoS One

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH