Cestode strobilation: prediction of developmental genes and pathways

Divergent Axin and GSK-3 paralogs in the beta-catenin destruction complexes of tapeworms

(2019) Jimena Montagne et al.   DEVELOPMENT GENES AND EVOLUTION

Transcriptomic profile of two developmental stages of the cestode parasite Mesocestoides corti

(2019) T. Basika et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Histone deacetylase enzymes as potential drug targets of Neglected Tropical Diseases caused by cestodes

(2019) Hugo R. Vaca et al.   International Journal for Parasitology-Drugs and Drug Resistance

Integration of transcriptomic and proteomic data identifies biological functions in cell populations from human infant lung

(2019) Yina Du et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

From intra- to extracellular vesicles: extracellular vesicles in developmental signalling

(2018) Ana-Citlali Gradilla et al.   Essays in Biochemistry

Probing recalcitrant problems in polyclad evolution and systematics with novel mitochondrial genome resources

(2018) Nathan J. Kenny et al.   GENOMICS

Comparative proteomics of the larval and adult stages of the model cestode parasite Mesocestoides corti

(2018) Jeferson Camargo de Lima et al.   Journal of Proteomics

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unique pharmacological properties of serotoninergic G-protein coupled receptors from cestodes

(2018) Federico Camicia et al.   PLoS Neglected Tropical Diseases

Comparative Proteomic Analysis of Hymenolepis diminuta Cysticercoid and Adult Stages

(2018) Anna Sulima et al.   Frontiers in Microbiology

Comparative genomics of the major parasitic worms

(2018)   NATURE GENETICS

Evolutionary developmental biology (evo-devo) of cestodes

(2017) Uriel Koziol   EXPERIMENTAL PARASITOLOGY

EGF-mediated EGFR/ERK signaling pathway promotes germinative cell proliferation in Echinococcus multilocularis that contributes to larval growth and development

(2017) Zhe Cheng et al.   PLoS Neglected Tropical Diseases

Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis

(2017) Julia Steinberg et al.   Scientific Reports

Comparative analysis of Wnt expression identifies a highly conserved developmental transition in flatworms

(2016) Uriel Koziol et al.   BMC BIOLOGY

Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences

(2016) Claudia Manzoni et al.   BRIEFINGS IN BIOINFORMATICS

Identification and profiling of microRNAs in two developmental stages of the model cestode parasite Mesocestoides corti

(2016) Tatiana Basika et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

WormBase 2016: expanding to enable helminth genomic research

(2015) Kevin L. Howe et al.   NUCLEIC ACIDS RESEARCH

Expression of the histone chaperone SET/TAF-Iβ during the strobilation process of Mesocestoides corti (Platyhelminthes, Cestoda)

(2015) CAROLINE B. COSTA et al.   PARASITOLOGY

Recent advances in Echinococcus genomics and stem cell research

(2015) U. Koziol et al.   VETERINARY PARASITOLOGY

Identification of Newly Synthesized Proteins by Echinococcus granulosus Protoscoleces upon Induction of Strobilation

(2015) João Antonio Debarba et al.   PLoS Neglected Tropical Diseases

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Planarian yorkie/YAP functions to integrate adult stem cell proliferation, organ homeostasis and maintenance of axial patterning

(2014) A. Y. T. Lin et al.   DEVELOPMENT

Identification and characterization of functional Smad8 and Smad4 homologues from Echinococcus granulosus

(2014) Chuanshan Zhang et al.   PARASITOLOGY RESEARCH

The nervous and prenervous roles of serotonin in Echinococcus spp.

(2013) F. Camicia et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

From Mouse to Human: Evolutionary Genomics Analysis of Human Orthologs of Essential Genes

(2013) Benjamin Georgi et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Comparison of co-expression measures: mutual information, correlation, and model based indices

(2012) Lin Song et al.   BMC BIOINFORMATICS

Distribution of events of positive selection and population differentiation in a metabolic pathway: the case of asparagine N-glycosylation

(2012) Giovanni Dall’Olio et al.   BMC EVOLUTIONARY BIOLOGY

Network methods for describing sample relationships in genomic datasets: application to Huntington’s disease

(2012) Michael C Oldham et al.   BMC Systems Biology

Whole-genome sequence of Schistosoma haematobium

(2012) Neil D Young et al.   NATURE GENETICS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni

(2012) Anna V. Protasio et al.   PLoS Neglected Tropical Diseases

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Echinococcus multilocularis: Molecular characterization of EmSmadE, a novel BR-Smad involved in TGF-β and BMP signaling

(2011) Kerstin Epping et al.   EXPERIMENTAL PARASITOLOGY

webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser

(2010) Ari Löytynoja et al.   BMC BIOINFORMATICS

Proteomic survey of the cestode Mesocestoides corti during the first 24 hours of strobilar development

(2010) Alice Laschuk et al.   PARASITOLOGY RESEARCH

Segmentation, metamerism and the Cambrian explosion

(2009) Juan Pablo Couso   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

The role of positive selection in determining the molecular cause of species differences in disease

(2008) Jessica J Vamathevan et al.   BMC EVOLUTIONARY BIOLOGY