Escher-Trace: a web application for pathway-based visualization of stable isotope tracing data

ElemCor: accurate data analysis and enrichment calculation for high-resolution LC-MS stable isotope labeling experiments

(2019) Di Du et al.   BMC BIOINFORMATICS

IsoCor: isotope correction for high-resolution MS labeling experiments

(2019) Pierre Millard et al.   BIOINFORMATICS

BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree

(2019) Charles J Norsigian et al.   NUCLEIC ACIDS RESEARCH

Metabolomics and Isotope Tracing

(2018) Cholsoon Jang et al.   CELL

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

(2018) Jasmine Chong et al.   NUCLEIC ACIDS RESEARCH

Enzyme promiscuity drives branched-chain fatty acid synthesis in adipose tissues

(2018) Martina Wallace et al.   Nature Chemical Biology

Correcting for natural isotope abundance and tracer impurity in MS-, MS/MS- and high-resolution-multiple-tracer-data from stable isotope labeling experiments with IsoCorrectoR

(2018) Paul Heinrich et al.   Scientific Reports

Oncogenic R132 IDH1 Mutations Limit NADPH for De Novo Lipogenesis through (D)2-Hydroxyglutarate Production in Fibrosarcoma Cells

(2018) Mehmet G. Badur et al.   Cell Reports

Orexin activation counteracts decreases in nonexercise activity thermogenesis (NEAT) caused by high-fat diet

(2017) P.E. Bunney et al.   PHYSIOLOGY & BEHAVIOR

Prevalence and multilocus genotyping of Cryptosporidium andersoni in dairy cattle and He cattle in Xinjiang, China

(2016) Meng Qi et al.   INFECTION GENETICS AND EVOLUTION

OpenMS: a flexible open-source software platform for mass spectrometry data analysis

(2016) Hannes L Röst et al.   NATURE METHODS

Tissue of origin dictates branched-chain amino acid metabolism in mutant Kras-driven cancers

(2016) J. R. Mayers et al.   SCIENCE

ICT: isotope correction toolbox

(2015) Christian Jungreuthmayer et al.   BIOINFORMATICS

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways

(2015) Zachary A. King et al.   PLoS Computational Biology

isoMETLIN: A Database for Isotope-Based Metabolomics

(2014) Kevin Cho et al.   ANALYTICAL CHEMISTRY

Tracing Compartmentalized NADPH Metabolism in the Cytosol and Mitochondria of Mammalian Cells

(2014) Caroline A. Lewis et al.   MOLECULAR CELL

Quantitative flux analysis reveals folate-dependent NADPH production

(2014) Jing Fan et al.   NATURE

Reductive glutamine metabolism is a function of the α-ketoglutarate to citrate ratio in cells

(2013) Sarah-Maria Fendt et al.   Nature Communications

Visualizing multi-omics data in metabolic networks with the software Omix—A case study

(2011) Peter Droste et al.   BIOSYSTEMS

Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia

(2011) Christian M. Metallo et al.   NATURE

Phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis

(2011) Jason W Locasale et al.   NATURE GENETICS

Metabolite profiles and the risk of developing diabetes

(2011) Thomas J Wang et al.   NATURE MEDICINE

Cancer Cell Metabolism: Warburg and Beyond

(2008) Peggy P. Hsu et al.   CELL

The Biology of Cancer: Metabolic Reprogramming Fuels Cell Growth and Proliferation

(2008) Ralph J. DeBerardinis et al.   Cell Metabolism