Matrix factorization with neural network for predicting circRNA-RBP interactions
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Matrix factorization with neural network for predicting circRNA-RBP interactions
Authors
Keywords
-
Journal
BMC BIOINFORMATICS
Volume 21, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-06-05
DOI
10.1186/s12859-020-3514-x
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- ACCBN: ant-Colony-clustering-based bipartite network method for predicting long non-coding RNA–protein interactions
- (2019) Rong Zhu et al. BMC BIOINFORMATICS
- Circular RNAs as promising biomarkers in cancer: detection, function, and beyond
- (2019) Shengli Li et al. Genome Medicine
- Expanded Expression Landscape and Prioritization of Circular RNAs in Mammals
- (2019) Peifeng Ji et al. Cell Reports
- The Landscape of Circular RNA in Cancer
- (2019) Josh N. Vo et al. CELL
- Widespread and Functional RNA Circularization in Localized Prostate Cancer
- (2019) Sujun Chen et al. CELL
- CRIP: predicting circRNA-RBP interaction sites using a codon-based encoding and hybrid deep neural networks
- (2019) Kaiming Zhang et al. RNA
- Comprehensive characterization of circular RNAs in ~ 1000 human cancer cell lines
- (2019) Hang Ruan et al. Genome Medicine
- Identifying Cancer-Specific circRNA–RBP Binding Sites Based on Deep Learning
- (2019) Zhengfeng Wang et al. MOLECULES
- CircSLNN: Identifying RBP-Binding Sites on circRNAs via Sequence Labeling Neural Networks
- (2019) Yuqi Ju et al. Frontiers in Genetics
- CircR2Disease: a manually curated database for experimentally supported circular RNAs associated with various diseases
- (2018) Chunyan Fan et al. Database-The Journal of Biological Databases and Curation
- Accurate prediction of protein-lncRNA interactions by diffusion and HeteSim features across heterogeneous network
- (2018) Lei Deng et al. BMC BIOINFORMATICS
- Translation of CircRNAs
- (2017) Nagarjuna Reddy Pamudurti et al. MOLECULAR CELL
- Circ-ZNF609 Is a Circular RNA that Can Be Translated and Functions in Myogenesis
- (2017) Ivano Legnini et al. MOLECULAR CELL
- DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome
- (2017) Tuğçe Aktaş et al. NATURE
- CSCD: a database for cancer-specific circular RNAs
- (2017) Siyu Xia et al. NUCLEIC ACIDS RESEARCH
- Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1
- (2017) Kotb Abdelmohsen et al. RNA Biology
- The biogenesis and emerging roles of circular RNAs
- (2016) Ling-Ling Chen NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The RNA Binding Protein Quaking Regulates Formation of circRNAs
- (2015) Simon J. Conn et al. CELL
- CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs
- (2015) Dawood B. Dudekula et al. RNA Biology
- Complementary Sequence-Mediated Exon Circularization
- (2014) Xiao-Ou Zhang et al. CELL
- circRNA Biogenesis Competes with Pre-mRNA Splicing
- (2014) Reut Ashwal-Fluss et al. MOLECULAR CELL
- Detecting and characterizing circular RNAs
- (2014) William R Jeck et al. NATURE BIOTECHNOLOGY
- circBase: a database for circular RNAs
- (2014) Petar Glažar et al. RNA
- Circular RNAs: splicing’s enigma variations
- (2013) Matthias W Hentze et al. EMBO JOURNAL
- Natural RNA circles function as efficient microRNA sponges
- (2013) Thomas B. Hansen et al. NATURE
- starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
- (2013) Jun-Hao Li et al. NUCLEIC ACIDS RESEARCH
- A bagging SVM to learn from positive and unlabeled examples
- (2013) F. Mordelet et al. PATTERN RECOGNITION LETTERS
- Circular RNAs are abundant, conserved, and associated with ALU repeats
- (2012) W. R. Jeck et al. RNA
- Predicting RNA-Protein Interactions Using Only Sequence Information
- (2011) Usha K Muppirala et al. BMC BIOINFORMATICS
- Matrix Factorization Techniques for Recommender Systems
- (2009) Yehuda Koren et al. COMPUTER
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now